Hierarchy For All Packages

Package Hierarchies:

com.google.gwt.user.client.impl, org.utgenome, org.utgenome.config, org.utgenome.core.cui, org.utgenome.format, org.utgenome.format.agp, org.utgenome.format.axt, org.utgenome.format.bed, org.utgenome.format.blast, org.utgenome.format.cseg, org.utgenome.format.egt, org.utgenome.format.fasta, org.utgenome.format.fastq, org.utgenome.format.gff3, org.utgenome.format.illumina, org.utgenome.format.keyword, org.utgenome.format.legacy, org.utgenome.format.psl, org.utgenome.format.sam, org.utgenome.format.silk.read, org.utgenome.format.wig, org.utgenome.graphics, org.utgenome.gwt.ipad.client, org.utgenome.gwt.ipad.event, org.utgenome.gwt.ribbon.client, org.utgenome.gwt.ribbon.client.model, org.utgenome.gwt.ribbon.client.ui, org.utgenome.gwt.utgb, org.utgenome.gwt.utgb.client, org.utgenome.gwt.utgb.client.bean, org.utgenome.gwt.utgb.client.bean.track, org.utgenome.gwt.utgb.client.bio, org.utgenome.gwt.utgb.client.canvas, org.utgenome.gwt.utgb.client.db, org.utgenome.gwt.utgb.client.db.datatype, org.utgenome.gwt.utgb.client.ribbon, org.utgenome.gwt.utgb.client.track, org.utgenome.gwt.utgb.client.track.bean, org.utgenome.gwt.utgb.client.track.impl, org.utgenome.gwt.utgb.client.track.lib, org.utgenome.gwt.utgb.client.track.lib.debug, org.utgenome.gwt.utgb.client.track.lib.old, org.utgenome.gwt.utgb.client.track.lib.old.datatype, org.utgenome.gwt.utgb.client.track.operation, org.utgenome.gwt.utgb.client.ui, org.utgenome.gwt.utgb.client.ui.tab, org.utgenome.gwt.utgb.client.ui.treeview, org.utgenome.gwt.utgb.client.util, org.utgenome.gwt.utgb.client.util.xml, org.utgenome.gwt.utgb.client.view, org.utgenome.gwt.utgb.server, org.utgenome.gwt.utgb.server.app, org.utgenome.gwt.utgb.server.app.example, org.utgenome.gwt.utgb.server.util, org.utgenome.gwt.utgb.server.util.graphic, org.utgenome.gwt.utgb.server.util.xml, org.utgenome.gwt.widget.client, org.utgenome.gwt.widget.client.impl, org.utgenome.shell, org.utgenome.shell.tomcat, org.utgenome.util, org.utgenome.util.aligner, org.utgenome.util.kmer, org.utgenome.util.repeat, org.utgenome.util.sv

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • org.utgenome.gwt.utgb.client.canvas.IntervalTree<T>
  • com.allen_sauer.gwt.dnd.client.drop.AbstractDropController (implements com.allen_sauer.gwt.dnd.client.drop.DropController)
    • org.utgenome.gwt.widget.client.impl.TabDropController
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • org.utgenome.gwt.utgb.client.util.CanonicalProperties
      • org.utgenome.gwt.utgb.client.util.Properties
  • org.utgenome.format.legacy.AcceptSpecies
  • org.utgenome.gwt.utgb.client.bio.ACGTEncoder
  • org.utgenome.config.ActionInfo
  • org.utgenome.format.agp.AGPPullParser
  • org.utgenome.gwt.utgb.client.bio.Alignment (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.bio.AlignmentResult (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.ui.Animation
  • org.utgenome.format.agp.Assembly
  • org.utgenome.format.axt.AXTAlignment
  • org.utgenome.format.axt.AXTLens (implements org.xerial.lens.TextFormatLens)
  • org.antlr.runtime.BaseRecognizer
    • org.antlr.runtime.Lexer (implements org.antlr.runtime.TokenSource)
      • org.utgenome.format.bed.BEDLexer
      • org.utgenome.format.wig.WIGLexer
    • org.antlr.runtime.Parser
      • org.utgenome.format.bed.BEDParser
      • org.utgenome.format.wig.WIGParser
  • org.utgenome.format.bed.BED2Silk
  • org.utgenome.format.bed.BED2Silk.BEDHeaderAttribute
  • org.utgenome.format.bed.BED2Silk.BEDHeaderDescription
  • org.utgenome.format.bed.BEDDatabase
  • org.utgenome.format.bed.BEDDatabase.BEDRangeQuery (implements org.utgenome.format.bed.BEDQuery)
  • org.utgenome.format.bed.BEDDatabase.DBBuilder
  • org.utgenome.format.bed.BEDTrack (implements java.io.Serializable)
  • org.utgenome.format.blast.Blast2Silk.BlastResult
  • org.utgenome.format.blast.Blast2Silk.BlastResult.BlastAlignment
  • org.utgenome.format.BlockReader
  • org.utgenome.format.BlockwiseFileReader
  • org.utgenome.gwt.utgb.client.util.BrowserInfo
  • org.utgenome.gwt.utgb.client.bio.ChrLoc (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.server.app.ChromosomeMap.Comparator4ChrName (implements java.util.Comparator<T>)
  • org.utgenome.gwt.utgb.server.app.ChromosomeMap.CytoBandComprator (implements java.util.Comparator<T>)
  • org.utgenome.graphics.ChromosomeMapCanvas
  • org.utgenome.graphics.ChromosomeWindow
  • org.utgenome.gwt.utgb.client.bio.ChrRange (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.bio.CIGAR (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.CIGAR.Element (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.CodonTable
  • org.utgenome.gwt.utgb.client.canvas.ColorUtil
  • org.utgenome.format.fasta.CompactACGT (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.format.fasta.CompactACGTWriter
  • org.utgenome.format.fasta.CompactFASTA
  • org.utgenome.format.fasta.CompactFASTA.OnDiskAccess (implements org.utgenome.format.fasta.CompactFASTA.PacFileAccess)
  • org.utgenome.format.fasta.CompactFASTA.OnMemoryBuffer (implements org.utgenome.format.fasta.CompactFASTA.PacFileAccess)
  • org.utgenome.format.fasta.CompactFASTAGenerator
  • org.utgenome.format.fasta.CompactFASTAIndex
  • org.utgenome.gwt.utgb.client.bio.CompactWIGData (implements org.utgenome.gwt.utgb.client.bio.GraphData)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.utgenome.shell.UTGBPortableWidget (implements org.utgenome.shell.ServerListener)
  • org.utgenome.config.ConnectionInfo
  • org.utgenome.gwt.utgb.client.bean.track.Content (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.silk.read.Coordinate
  • org.utgenome.gwt.utgb.client.bio.Coordinate (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.shell.Create.CreateAllScaffoldFileFilter (implements org.utgenome.shell.Create.ScaffoldFileFilter)
  • org.utgenome.format.cseg.CSEGDatabase
  • org.utgenome.format.cseg.CSEGDatabase.Config
  • org.utgenome.gwt.utgb.server.app.CSEGViewer.GraphicalOutput (implements org.xerial.db.sql.BeanResultHandler<T>)
  • org.utgenome.gwt.utgb.server.app.CSEGViewer.SEGData
  • org.utgenome.gwt.utgb.client.bio.CytoBand (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.server.app.DASDsn.DSN
  • org.utgenome.gwt.utgb.server.app.DASDsn.DSNQuery
  • org.utgenome.gwt.utgb.server.app.DASDsn.DSNSource
  • org.utgenome.gwt.utgb.client.bio.DASResult (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature.FeatureType (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature.Group (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature.Group.Link (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature.Method (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature.Target (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.DASGFF (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.DASResult.Segment (implements java.io.Serializable)
  • org.xerial.db.sql.DatabaseAccessBase (implements org.xerial.db.sql.DatabaseAccess)
    • org.utgenome.gwt.utgb.server.JDBCService.GenericDBAccess
    • org.utgenome.gwt.utgb.server.JDBCService.HSQLDBAccess
  • org.utgenome.gwt.utgb.client.db.DatabaseCatalog
  • org.utgenome.gwt.utgb.client.bean.DatabaseEntry (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.config.DatabaseInfo
  • org.utgenome.gwt.utgb.client.db.datatype.DataTypeBase (implements org.utgenome.gwt.utgb.client.db.datatype.DataType)
    • org.utgenome.gwt.utgb.client.db.datatype.BooleanType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.ColorType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.DispType
    • org.utgenome.gwt.utgb.client.db.datatype.DoubleType
    • org.utgenome.gwt.utgb.client.db.datatype.FloatType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.GradationType
    • org.utgenome.gwt.utgb.client.db.datatype.IntegerType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.LowerBoundType
    • org.utgenome.gwt.utgb.client.db.datatype.PasswordType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.SelectType
    • org.utgenome.gwt.utgb.client.db.datatype.StringListType
    • org.utgenome.gwt.utgb.client.db.datatype.StringType
    • org.utgenome.gwt.utgb.client.db.datatype.TextType
    • org.utgenome.gwt.utgb.client.track.lib.old.datatype.UpperBoundType
  • org.utgenome.gwt.utgb.server.DefaultRequestMap (implements org.utgenome.gwt.utgb.server.RequestMap)
  • org.utgenome.gwt.utgb.client.track.Design
  • org.utgenome.util.repeat.DisjointSet<E>
  • org.utgenome.gwt.utgb.client.util.xml.DOMUtil
  • org.utgenome.gwt.widget.client.DragListener
  • org.utgenome.format.egt.EagyGeneLine
  • org.utgenome.format.egt.EGTXMLReader
  • com.google.web.bindery.event.shared.Event<H>
    • com.google.gwt.event.shared.GwtEvent<H>
      • com.google.gwt.event.dom.client.DomEvent<H> (implements com.google.gwt.event.dom.client.HasNativeEvent)
        • org.utgenome.gwt.ipad.event.TouchEvent<H>
          • org.utgenome.gwt.ipad.event.TouchCancelEvent
          • org.utgenome.gwt.ipad.event.TouchEndEvent
          • org.utgenome.gwt.ipad.event.TouchMoveEvent
          • org.utgenome.gwt.ipad.event.TouchStartEvent
  • org.utgenome.gwt.utgb.client.track.operation.EventImpl (implements com.google.gwt.event.shared.EventHandler)
    • org.utgenome.gwt.utgb.client.track.operation.MenuOperationItem (implements com.google.gwt.event.dom.client.ClickHandler)
    • org.utgenome.gwt.utgb.client.track.operation.MouseClickEventImpl (implements com.google.gwt.event.dom.client.ClickHandler)
  • org.utgenome.format.egt.Exon
  • org.utgenome.format.fasta.FASTA
  • org.utgenome.format.fasta.FASTA.RawStringWrapper (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.format.fasta.FASTADatabase
  • org.utgenome.format.fasta.FASTADatabase.Config
  • org.utgenome.format.fasta.FASTADatabase.NSeq
  • org.utgenome.format.fasta.FASTAPullParser
  • org.utgenome.format.fasta.FASTASequence
  • org.utgenome.gwt.utgb.client.bio.FASTASequence (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.fastq.FastqRead
  • org.utgenome.format.fastq.FastqReader
  • org.utgenome.format.fastq.FastqSplitReader
  • org.utgenome.format.fastq.FastqToBAM
  • org.utgenome.format.FileBlock
  • org.utgenome.util.FileUtil
  • org.utgenome.gwt.utgb.server.app.FontPanel.FontInfo
  • org.utgenome.format.FormatConversionReader.PipeConsumer
    • org.utgenome.format.blast.Blast2Silk.Blast2SilkConverter
  • org.utgenome.gwt.utgb.client.bean.track.Frame (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.track.operation.FrameCommandImpl (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.format.egt.Gene
  • org.utgenome.graphics.GeneCanvas
  • org.utgenome.graphics.GeneCanvas.LocusLayout
  • javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • javax.servlet.http.HttpServlet (implements java.io.Serializable)
      • com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet
        • com.google.gwt.user.server.rpc.RemoteServiceServlet (implements com.google.gwt.user.server.rpc.SerializationPolicyProvider)
          • org.utgenome.gwt.utgb.server.BrowserServiceImpl (implements org.utgenome.gwt.utgb.client.BrowserService)
      • org.utgenome.gwt.utgb.server.HelloServlet
      • org.utgenome.gwt.utgb.server.RequestHandlerBase (implements org.utgenome.gwt.utgb.server.RequestHandler)
        • org.utgenome.gwt.utgb.server.app.Hello
        • org.utgenome.gwt.utgb.server.app.RoundCircle
        • org.utgenome.gwt.utgb.server.app.SQLiteAccessSample
        • org.utgenome.gwt.utgb.server.app.TextLabel
        • org.utgenome.gwt.utgb.server.WebTrackBase
          • org.utgenome.gwt.utgb.server.app.ACGT
          • org.utgenome.gwt.utgb.server.app.BEDViewer (implements java.io.Serializable)
          • org.utgenome.gwt.utgb.server.app.BSSReadView
          • org.utgenome.gwt.utgb.server.app.ChromosomeMap
          • org.utgenome.gwt.utgb.server.app.CSEGViewer
          • org.utgenome.gwt.utgb.server.app.DASDsn
          • org.utgenome.gwt.utgb.server.app.DASViewer
          • org.utgenome.gwt.utgb.server.app.DotPlot
          • org.utgenome.gwt.utgb.server.app.EchoBackView
          • org.utgenome.gwt.utgb.server.app.FontMetric
          • org.utgenome.gwt.utgb.server.app.FontPanel
          • org.utgenome.gwt.utgb.server.app.GeneViewer
          • org.utgenome.gwt.utgb.server.app.KeywordSearch
          • org.utgenome.gwt.utgb.server.app.LoadView
          • org.utgenome.gwt.utgb.server.app.MethylViewer
          • org.utgenome.gwt.utgb.server.app.ReadView
          • org.utgenome.gwt.utgb.server.app.SAMViewer
          • org.utgenome.gwt.utgb.server.app.ScaleBar
          • org.utgenome.gwt.utgb.server.app.Sequence
          • org.utgenome.gwt.utgb.server.app.SnappyVersion
          • org.utgenome.gwt.utgb.server.app.Transparent
          • org.utgenome.gwt.utgb.server.app.example.UsingTemplate
  • org.utgenome.util.sv.GeneticVariation
    • org.utgenome.util.sv.EnhancedGeneticVariation
  • org.utgenome.graphics.GenomeCanvas
  • org.utgenome.gwt.ribbon.client.model.GenomeCoordinate (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.GenomeDB (implements java.io.Serializable)
    • org.utgenome.gwt.utgb.client.bio.DASLocation
  • org.utgenome.format.keyword.GenomeKeywordEntry
  • org.utgenome.format.keyword.GenomeKeywordEntry.KeywordAlias
  • org.utgenome.gwt.utgb.client.bio.GenomeRangeDataSet (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.GenomeRangeVisitorBase (implements org.utgenome.gwt.utgb.client.bio.GenomeRangeVisitor)
    • org.utgenome.gwt.utgb.client.bio.InfoSilkGenerator
    • org.utgenome.gwt.utgb.client.canvas.IntervalLayout.IntervalRetriever
  • org.utgenome.graphics.GenomeWindow
  • org.utgenome.gwt.utgb.client.util.GETMethodURL
  • org.utgenome.format.gff3.GFF3Entry
  • org.utgenome.format.gff3.GFF3Reader
  • org.xerial.util.opt.GlobalCommandOption
    • org.utgenome.shell.UTGBShell.UTGBShellOption
  • org.utgenome.gwt.utgb.server.util.graphic.GraphicUtil
  • org.utgenome.gwt.utgb.client.canvas.GWTGenomeCanvas.DragPoint
  • org.utgenome.gwt.utgb.client.canvas.GWTGraphCanvas.GraphStyle
  • org.utgenome.gwt.utgb.client.canvas.GWTGraphCanvas.Indent
  • org.utgenome.gwt.utgb.client.bean.track.HiddenParameter (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.server.util.xml.HTMLContentFilter (implements org.utgenome.gwt.utgb.server.util.xml.TextContentFilter)
  • org.utgenome.gwt.utgb.client.ui.IconImage
  • org.utgenome.gwt.widget.client.ImageLoader
  • org.utgenome.config.ImportStmt
  • java.io.InputStream (implements java.io.Closeable)
    • org.utgenome.util.ReaderInputStream
    • org.utgenome.util.StandardInputStream
  • org.utgenome.gwt.utgb.client.bio.Interval (implements java.lang.Comparable<T>, org.utgenome.gwt.utgb.client.bio.GenomeRange, java.io.Serializable)
    • org.utgenome.gwt.utgb.client.bio.CDS
    • org.utgenome.gwt.utgb.client.bio.ChrInterval
    • org.utgenome.gwt.utgb.client.bio.Exon
    • org.utgenome.gwt.utgb.client.bio.Gap
    • org.utgenome.gwt.utgb.client.bio.Read
      • org.utgenome.gwt.utgb.client.bio.BlastResult
      • org.utgenome.gwt.utgb.client.bio.BSSRead
      • org.utgenome.gwt.utgb.server.app.BSSReadView.BSSAlignment
      • org.utgenome.gwt.utgb.server.app.ChromosomeMap.ReadLocus
      • org.utgenome.gwt.utgb.client.bio.DASResult.DASFeature
      • org.utgenome.gwt.utgb.client.bio.Gene (implements java.io.Serializable)
        • org.utgenome.gwt.utgb.client.bio.BEDGene (implements java.io.Serializable)
          • org.utgenome.format.bed.BEDEntry
      • org.utgenome.gwt.utgb.server.app.MethylViewer.MethlEntry
    • org.utgenome.gwt.utgb.client.bio.ReadCoverage
    • org.utgenome.gwt.utgb.client.bio.ReadList
    • org.utgenome.gwt.utgb.client.bio.ReferenceSequence
    • org.utgenome.util.repeat.RepeatChainFinder.FlippedInterval2D
    • org.utgenome.util.repeat.RepeatChainFinder.Interval2D
    • org.utgenome.gwt.utgb.client.bio.SAMReadLight
      • org.utgenome.gwt.utgb.client.bio.SAMRead
    • org.utgenome.gwt.utgb.client.bio.SAMReadPair
    • org.utgenome.gwt.utgb.client.bio.SAMReadPairFragment
  • org.utgenome.gwt.utgb.client.canvas.IntervalLayout
  • org.utgenome.gwt.utgb.client.canvas.IntervalLayout.LocusLayout
  • com.google.gwt.core.client.JavaScriptObject
    • org.utgenome.gwt.widget.client.ImageHandle
    • org.utgenome.gwt.ipad.event.Touch
  • org.utgenome.gwt.utgb.server.JDBCService
  • org.utgenome.gwt.utgb.client.util.JSONUtil
  • org.utgenome.format.keyword.KeywordAliasReader
  • org.utgenome.format.keyword.KeywordDB
  • org.utgenome.gwt.utgb.client.bio.KeywordSearchResult (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.bio.KeywordSearchResult.Entry (implements java.io.Serializable)
  • org.utgenome.format.fasta.Kmer (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.util.kmer.KmerIntegerFactory
  • org.utgenome.gwt.utgb.client.bean.track.Layer (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.track.bean.LegacyTrackInformation (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.track.operation.LinkOperation (implements org.utgenome.gwt.utgb.client.track.operation.Operation)
  • org.utgenome.shell.Maven.CommandExecutor
  • org.utgenome.gwt.utgb.client.track.operation.MenuOperation (implements org.utgenome.gwt.utgb.client.track.operation.Operation)
  • org.utgenome.gwt.utgb.client.ui.MouseMoveListener (implements com.google.gwt.event.dom.client.MouseDownHandler, com.google.gwt.event.dom.client.MouseMoveHandler, com.google.gwt.event.dom.client.MouseUpHandler)
  • org.utgenome.gwt.utgb.client.util.xml.NodeListImpl (implements com.google.gwt.xml.client.NodeList)
  • org.utgenome.format.ObjectStreamReader
  • org.utgenome.format.ObjectStreamReader.TextReader (implements java.util.concurrent.Callable<V>, org.xerial.lens.ObjectStreamHandler)
  • org.utgenome.format.legacy.OldDescriptionXML
  • org.utgenome.format.legacy.OldDescriptionXMLReader
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameMoveAbsCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameMoveRelCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameParameterSetCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameSetRevisionCommand
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameSetSpeciesCommand
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameSetTargetCommand
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameRevCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameSetEndCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameSetStartCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBFrameCommandImpl.FrameZoomAbsCommand (implements org.utgenome.gwt.utgb.client.track.operation.FrameCommand)
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBOptionAttribute
  • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBProperty
  • org.utgenome.config.OldViewXML
  • org.utgenome.config.OldViewXML.GroupProperties
  • org.utgenome.config.OldViewXML.Prop
  • org.utgenome.config.OldViewXML.Track
  • org.utgenome.config.OldViewXML.TrackGroup
  • org.utgenome.config.OldViewXML.TrackWindow
  • org.utgenome.gwt.utgb.client.track.operation.OperationImpl (implements org.utgenome.gwt.utgb.client.track.operation.Operation)
    • org.utgenome.gwt.utgb.client.track.operation.FrameOperation
    • org.utgenome.gwt.utgb.client.track.operation.SubOperation
      • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBSubOperationImpl
  • org.utgenome.gwt.utgb.client.track.operation.OperationParser
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBOperationParser
    • org.utgenome.gwt.utgb.client.track.operation.OperationParserImpl
  • org.utgenome.gwt.utgb.client.bean.track.Option (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.util.Optional<T>
  • org.utgenome.util.OSInfo
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • org.utgenome.util.StandardOutputStream
  • org.utgenome.gwt.utgb.client.bean.track.Parameter (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.egt.ParameterMap (implements org.utgenome.format.egt.Parameter)
  • org.utgenome.gwt.widget.client.impl.PathElement
  • org.utgenome.shell.POM
  • org.utgenome.shell.POMProperties
  • org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree<E> (implements java.lang.Iterable<T>)
  • org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree.Node
  • org.utgenome.format.psl.PSLLine
  • org.utgenome.format.psl.PSLPullParser
  • org.utgenome.format.illumina.QSeqToFASTQ
  • org.utgenome.format.egt.Range
  • org.utgenome.format.silk.read.Read
  • org.utgenome.graphics.ReadCanvas
  • org.utgenome.graphics.ReadCanvas.DrawStyle
  • org.utgenome.format.silk.read.ReadDBBuilder
  • org.utgenome.util.ReadDepth
  • org.utgenome.gwt.utgb.client.canvas.ReadDisplayStyle
  • java.io.Reader (implements java.io.Closeable, java.lang.Readable)
    • java.io.BufferedReader
      • org.utgenome.format.blast.Blast2Silk.PeekableReader
    • org.utgenome.format.FormatConversionReader
      • org.utgenome.format.bed.BED2SilkReader
      • org.utgenome.format.blast.Blast2Silk
      • org.utgenome.format.fastq.FastqToSilkReader
      • org.utgenome.format.sam.SAM2SilkReader
      • org.utgenome.format.wig.WIG2SilkReader
  • org.utgenome.gwt.utgb.client.bio.ReadQueryConfig (implements java.io.Serializable)
  • org.utgenome.core.cui.ReadStat.ReadAlignmentStat
  • org.utgenome.format.sam.ReadSweeper<T>
  • org.utgenome.format.silk.read.Reference
    • org.utgenome.format.silk.read.ReadDBBuilder.ReferenceReader
  • org.utgenome.core.cui.RegionQueryExpr
  • org.utgenome.gwt.utgb.client.db.Relation (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.util.repeat.RepeatChainFinder
  • org.utgenome.util.repeat.RepeatChainFinder.IntervalCluster (implements java.lang.Comparable<T>)
  • org.utgenome.gwt.utgb.server.RequestDispatcher (implements javax.servlet.Filter)
  • org.utgenome.gwt.utgb.server.RequestHandlerTable
  • org.utgenome.gwt.utgb.server.RequestURI
  • org.utgenome.gwt.utgb.client.track.bean.Result (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.ribbon.Ribbon
  • org.utgenome.gwt.ribbon.client.model.Ribbon (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.ribbon.Ribbon.Crease
  • org.utgenome.gwt.ribbon.client.model.Ribbon.RibbonSegment
  • org.utgenome.gwt.ribbon.client.RibbonBrowser (implements com.google.gwt.core.client.EntryPoint)
  • org.utgenome.graphics.RibbonCanvas
  • org.utgenome.gwt.utgb.client.canvas.RibbonCanvas
  • org.utgenome.gwt.utgb.client.RPCServiceManager
  • org.antlr.runtime.RuleReturnScope
    • org.antlr.runtime.ParserRuleReturnScope
      • org.utgenome.format.bed.BEDParser.attribute_return
      • org.utgenome.format.bed.BEDParser.attributeValue_return
      • org.utgenome.format.bed.BEDParser.description_return
      • org.utgenome.format.bed.BEDParser.descriptionName_return
      • org.utgenome.format.wig.WIGParser.attribute_return
      • org.utgenome.format.wig.WIGParser.attributeValue_return
      • org.utgenome.format.wig.WIGParser.description_return
      • org.utgenome.format.wig.WIGParser.descriptionName_return
  • org.utgenome.format.sam.Sam2WigConverter
  • org.utgenome.format.sam.Sam2WigConverter.CoverageWriter (implements org.utgenome.util.ReadDepth.DepthOutput)
  • org.utgenome.format.sam.Sam2WigConverter.SAMRecordCursor (implements java.util.Iterator<E>)
  • org.utgenome.format.sam.SAMLens
  • org.utgenome.format.sam.SAMReader
  • org.utgenome.format.sam.SAMReader.CompleteSAMReadFactory (implements org.utgenome.format.sam.SAMReader.SAMReadFactory)
  • org.utgenome.format.sam.SAMReader.LightWeightSAMReadFactory (implements org.utgenome.format.sam.SAMReader.SAMReadFactory)
  • org.utgenome.gwt.utgb.client.bio.SAMReadFlag
  • org.utgenome.format.sam.SAMReadIterator (implements java.util.Iterator<E>)
  • org.utgenome.format.sam.SAMToFastq
  • org.utgenome.shell.ScaffoldGenerator
  • org.utgenome.gwt.utgb.client.canvas.Scale
  • org.utgenome.gwt.utgb.client.track.bean.SearchResult (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.bean.track.SEGRecord (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.illumina.Seq2Fastq
  • org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase (implements org.xerial.db.sql.BeanResultHandler<T>)
    • org.utgenome.format.fasta.FASTADatabase.TextOutput
    • org.utgenome.gwt.utgb.server.app.Sequence.GraphicalOutput
    • org.utgenome.gwt.utgb.server.app.Sequence.JSONOutput
    • org.utgenome.gwt.utgb.server.app.Sequence.TextOutput
    • org.utgenome.gwt.utgb.server.app.Sequence.XMLOutput
  • org.utgenome.gwt.utgb.client.track.bean.SequenceInfo
  • org.utgenome.gwt.utgb.server.util.ServletUtil
  • org.utgenome.gwt.utgb.client.bean.track.Species (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.legacy.SpeciesEntry
  • org.utgenome.gwt.utgb.client.track.bean.SpeciesRevision (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.util.StringUtil
  • org.utgenome.gwt.widget.client.StringUtil
  • org.utgenome.gwt.widget.client.Style
  • org.utgenome.gwt.utgb.client.ui.tab.TabEntry.TabEntryFactory
  • org.utgenome.gwt.utgb.client.util.TableData
  • org.utgenome.gwt.utgb.client.track.bean.Tag (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.util.TestHelper
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.utgenome.gwt.utgb.client.UTGBClientException (implements java.io.Serializable)
      • org.utgenome.UTGBException
      • org.utgenome.shell.UTGBShellException
  • org.utgenome.shell.tomcat.TomcatServer
  • org.utgenome.shell.tomcat.TomcatServer.Opt
  • org.utgenome.shell.tomcat.TomcatServerConfiguration
  • org.utgenome.gwt.utgb.client.track.Track.TrackFactory
  • org.utgenome.gwt.utgb.client.track.TrackBase (implements org.utgenome.gwt.utgb.client.track.Track)
    • org.utgenome.gwt.utgb.client.track.lib.ChromosomeMapTrack
    • org.utgenome.gwt.utgb.client.track.lib.DBSelectTrack
    • org.utgenome.gwt.utgb.client.track.lib.GenomeTrack
      • org.utgenome.gwt.utgb.client.track.lib.BEDTrack
      • org.utgenome.gwt.utgb.client.track.lib.CSEGTrack
      • org.utgenome.gwt.utgb.client.track.lib.RefSeqTrack
      • org.utgenome.gwt.utgb.client.track.lib.ScaleBarTrack
    • org.utgenome.gwt.utgb.client.track.lib.GenomeTrackTextTest
    • org.utgenome.gwt.utgb.client.track.lib.KeywordSearchTrack
    • org.utgenome.gwt.utgb.client.track.lib.MiniBrowserTrack
    • org.utgenome.gwt.utgb.client.track.lib.NavigatorTrack
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBAddTrackTrack (implements com.google.gwt.event.dom.client.ClickHandler)
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBPropertyTrack
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBTrack
      • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBRulerTrack
    • org.utgenome.gwt.utgb.client.track.lib.old.OperationTrack
    • org.utgenome.gwt.utgb.client.track.lib.ParameterTrack
    • org.utgenome.gwt.utgb.client.track.lib.debug.PropertyEditTrack
    • org.utgenome.gwt.utgb.client.track.lib.ReadTrack
      • org.utgenome.gwt.utgb.client.track.lib.DASTrack
    • org.utgenome.gwt.utgb.client.track.lib.RibbonRulerTrack
    • org.utgenome.gwt.utgb.client.track.lib.RulerTrack (implements org.utgenome.gwt.utgb.client.track.RangeSelectable)
    • org.utgenome.gwt.utgb.client.track.lib.SAMQueryTrack
    • org.utgenome.gwt.utgb.client.track.lib.SAMTrack
    • org.utgenome.gwt.utgb.client.track.lib.ScrollButtonTrack
    • org.utgenome.gwt.utgb.client.track.lib.SequenceRulerTrack (implements org.utgenome.gwt.utgb.client.track.RangeSelectable)
    • org.utgenome.gwt.utgb.client.track.lib.ToolBoxTrack
      • org.utgenome.gwt.utgb.client.track.lib.debug.DebugToolBoxTrack
    • org.utgenome.gwt.utgb.client.track.lib.TrackGenTrack
    • org.utgenome.gwt.utgb.client.track.lib.TrackTreeTrack (implements org.utgenome.gwt.utgb.client.track.TrackUpdateListener)
    • org.utgenome.gwt.utgb.client.track.lib.debug.URLQueryArgumentTrack
    • org.utgenome.gwt.utgb.client.track.lib.ValueSelectorTrack
    • org.utgenome.gwt.utgb.client.track.lib.ViewLoaderTrack
    • org.utgenome.gwt.utgb.client.track.lib.WIGTrack
      • org.utgenome.gwt.utgb.client.track.lib.WIGGraphCanvasTrack
    • org.utgenome.gwt.utgb.client.track.lib.WindowControlTrack
  • org.utgenome.gwt.utgb.client.track.TrackBase.TrackFrameConfig
  • org.utgenome.gwt.utgb.client.track.bean.TrackBean (implements java.lang.Comparable<T>, com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.widget.client.TrackButtonListenerAdapter (implements org.utgenome.gwt.widget.client.TrackButtonListener)
  • org.utgenome.gwt.utgb.client.track.TrackComparator (implements java.util.Comparator<T>)
  • org.utgenome.gwt.utgb.client.track.impl.TrackConfigChangeImpl (implements org.utgenome.gwt.utgb.client.track.TrackConfigChange)
  • org.utgenome.config.TrackConfiguration
  • org.utgenome.gwt.utgb.client.bean.track.TrackDescription (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.view.TrackDisplay
  • org.utgenome.gwt.utgb.client.view.TrackDisplay.DB
  • org.utgenome.gwt.utgb.client.view.TrackDisplay.Track
  • org.utgenome.gwt.utgb.client.track.TrackFactoryHolder
  • org.utgenome.gwt.utgb.client.track.TrackFactorySetup
  • org.utgenome.gwt.utgb.client.track.TrackFrameState
  • org.utgenome.gwt.utgb.client.track.TrackGroup (implements java.lang.Comparable<T>, org.utgenome.gwt.utgb.client.track.TrackEntry)
    • org.utgenome.gwt.utgb.client.track.lib.old.OldUTGBTrackGroup
  • org.utgenome.gwt.utgb.client.track.bean.TrackGroupBean (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.track.bean.TrackGroupPropertyBean (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.track.TrackGroupPropertyChangeListenerAdapter (implements org.utgenome.gwt.utgb.client.track.TrackGroupPropertyChangeListener)
  • org.utgenome.gwt.utgb.client.track.impl.TrackGroupPropertyImpl (implements org.utgenome.gwt.utgb.client.track.TrackGroupProperty, org.utgenome.gwt.utgb.client.track.TrackGroupPropertyWriter)
  • org.utgenome.gwt.utgb.client.track.TrackInfo
  • org.utgenome.gwt.utgb.TrackLoaderGenerator
  • org.utgenome.gwt.utgb.TrackLoaderGenerator.Config
  • org.utgenome.gwt.utgb.client.track.TrackRangeSelector (implements com.google.gwt.event.dom.client.MouseDownHandler, com.google.gwt.event.dom.client.MouseMoveHandler)
  • org.utgenome.gwt.utgb.client.track.TrackUpdateListenerAdapter (implements org.utgenome.gwt.utgb.client.track.TrackUpdateListener)
  • org.utgenome.gwt.utgb.client.view.TrackView (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.view.TrackView.Coordinate (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.view.TrackView.Track (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.view.TrackView.TrackGroup (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.track.TrackWindow (implements java.lang.Comparable<T>, java.io.Serializable)
  • org.utgenome.gwt.utgb.client.track.bean.TrackWindowBean (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.canvas.TrackWindowChain
  • org.utgenome.gwt.utgb.client.canvas.TrackWindowChain.WindowUpdateInfo
  • com.google.gwt.user.client.ui.UIObject (implements com.google.gwt.user.client.ui.HasVisibility)
    • com.google.gwt.user.client.ui.Widget (implements com.google.gwt.user.client.EventListener, com.google.gwt.event.logical.shared.HasAttachHandlers, com.google.gwt.user.client.ui.IsWidget)
      • com.google.gwt.user.client.ui.Composite (implements com.google.gwt.user.client.ui.IsRenderable)
        • org.utgenome.gwt.utgb.client.canvas.BarGraphCanvas
        • org.utgenome.gwt.utgb.client.ui.Border
        • org.utgenome.gwt.utgb.client.db.DatabaseTable
        • org.utgenome.gwt.utgb.client.ui.DraggableTable
        • org.utgenome.gwt.utgb.client.db.DynamicForm
        • org.utgenome.gwt.utgb.client.ui.EditableTable
        • org.utgenome.gwt.widget.client.FrameBorder
        • org.utgenome.gwt.utgb.client.canvas.GraphScale
        • org.utgenome.gwt.utgb.client.canvas.GWTGraphCanvas
        • org.utgenome.gwt.widget.client.HorizontalBorder
        • org.utgenome.gwt.utgb.client.db.datatype.InputForm
          • org.utgenome.gwt.utgb.client.db.datatype.BooleanType.BooleanTypeForm
          • org.utgenome.gwt.utgb.client.track.lib.old.datatype.ConfigInputForm
          • org.utgenome.gwt.utgb.client.db.datatype.DoubleType.DoubleTypeForm
          • org.utgenome.gwt.utgb.client.db.datatype.FloatType.FloatTypeForm
          • org.utgenome.gwt.utgb.client.db.datatype.IntegerType.IntegerTypeForm
          • org.utgenome.gwt.utgb.client.db.datatype.IntegerType.IntegerTypeListBox
          • org.utgenome.gwt.utgb.client.db.datatype.PasswordType.PasswordTypeForm
          • org.utgenome.gwt.utgb.client.db.datatype.StringType.StringTypeForm
          • org.utgenome.gwt.utgb.client.db.datatype.StringType.StringTypeListBox
          • org.utgenome.gwt.utgb.client.db.datatype.TextType.TextTypeForm
        • org.utgenome.gwt.utgb.client.ui.Message
        • org.utgenome.gwt.utgb.client.canvas.RibbonRuler
        • org.utgenome.gwt.utgb.client.ui.RoundCornerFrame
        • org.utgenome.gwt.utgb.client.canvas.SAMCanvas
        • org.utgenome.gwt.utgb.client.ui.SVGPanel
        • org.utgenome.gwt.widget.client.Tab (implements com.google.gwt.event.dom.client.MouseOutHandler, com.google.gwt.event.dom.client.MouseOverHandler)
        • org.utgenome.gwt.widget.client.TabbedTrackFrame
        • org.utgenome.gwt.utgb.client.ui.tab.TabEntry (implements org.utgenome.gwt.utgb.client.ui.tab.TabEventListener)
        • org.utgenome.gwt.utgb.client.ui.tab.TabViewer (implements com.google.gwt.event.logical.shared.BeforeSelectionHandler<T>, com.google.gwt.event.logical.shared.SelectionHandler<T>)
        • org.utgenome.gwt.ipad.client.TouchableComposite (implements org.utgenome.gwt.ipad.event.HasTouchHandlers)
          • org.utgenome.gwt.utgb.client.canvas.GWTGenomeCanvas
        • org.utgenome.gwt.utgb.client.ui.TrackFrame (implements org.utgenome.gwt.utgb.client.ui.Frame)
        • org.utgenome.gwt.widget.client.TrackFrame
          • org.utgenome.gwt.widget.client.impl.TrackPanelBase
            • org.utgenome.gwt.widget.client.HorizontalTrackFrame
            • org.utgenome.gwt.widget.client.TrackWindowPanel
        • org.utgenome.gwt.utgb.client.track.TrackQueue (implements org.utgenome.gwt.utgb.client.track.TrackLayoutManager, org.utgenome.gwt.utgb.client.track.TrackUpdateListener, org.utgenome.gwt.utgb.client.ui.WindowListener)
        • org.utgenome.gwt.widget.client.TrackTitleBar
        • org.utgenome.gwt.utgb.client.ui.treeview.TreePanel
        • org.utgenome.gwt.utgb.client.ui.treeview.TreeView
        • org.utgenome.gwt.widget.client.VerticalDraggableTrackPanel (implements org.utgenome.gwt.widget.client.TrackPanel)
        • org.utgenome.gwt.ribbon.client.ui.WeaverCanvas
        • org.utgenome.gwt.ribbon.client.ui.WeaverMainFrame
        • org.utgenome.gwt.utgb.client.ui.WindowTitleBar
      • com.google.gwt.user.client.ui.FocusWidget (implements com.google.gwt.event.dom.client.HasAllDragAndDropHandlers, com.google.gwt.event.dom.client.HasAllFocusHandlers, com.google.gwt.event.dom.client.HasAllGestureHandlers, com.google.gwt.event.dom.client.HasAllKeyHandlers, com.google.gwt.event.dom.client.HasAllMouseHandlers, com.google.gwt.event.dom.client.HasAllTouchHandlers, com.google.gwt.event.dom.client.HasClickHandlers, com.google.gwt.event.dom.client.HasDoubleClickHandlers, com.google.gwt.user.client.ui.HasEnabled, com.google.gwt.user.client.ui.HasFocus, com.google.gwt.user.client.ui.SourcesClickEvents, com.google.gwt.user.client.ui.SourcesMouseEvents)
        • com.google.gwt.user.client.ui.ValueBoxBase<T> (implements com.google.gwt.i18n.client.AutoDirectionHandler.Target, com.google.gwt.event.dom.client.HasChangeHandlers, com.google.gwt.i18n.shared.HasDirectionEstimator, com.google.gwt.user.client.ui.HasName, com.google.gwt.user.client.ui.HasValue<T>, com.google.gwt.editor.client.IsEditor<E>)
          • com.google.gwt.user.client.ui.TextBoxBase (implements com.google.gwt.user.client.ui.SourcesChangeEvents)
            • com.google.gwt.user.client.ui.TextBox
              • org.utgenome.gwt.utgb.client.ui.EditableLabel
      • com.google.gwt.user.client.ui.Image (implements com.google.gwt.event.dom.client.HasAllDragAndDropHandlers, com.google.gwt.event.dom.client.HasAllGestureHandlers, com.google.gwt.event.dom.client.HasAllMouseHandlers, com.google.gwt.event.dom.client.HasAllTouchHandlers, com.google.gwt.event.dom.client.HasClickHandlers, com.google.gwt.event.dom.client.HasDoubleClickHandlers, com.google.gwt.event.dom.client.HasErrorHandlers, com.google.gwt.event.dom.client.HasLoadHandlers, com.google.gwt.user.client.ui.SourcesClickEvents, com.google.gwt.user.client.ui.SourcesLoadEvents, com.google.gwt.user.client.ui.SourcesMouseEvents)
        • org.utgenome.gwt.utgb.client.ui.Icon (implements com.google.gwt.event.dom.client.MouseOutHandler, com.google.gwt.event.dom.client.MouseOverHandler)
        • org.utgenome.gwt.utgb.client.track.operation.OperationArea (implements com.google.gwt.event.dom.client.MouseOutHandler, com.google.gwt.event.dom.client.MouseOverHandler)
        • org.utgenome.gwt.utgb.client.ui.TextImage
      • com.google.gwt.user.client.ui.LabelBase<T> (implements com.google.gwt.user.client.ui.HasAutoHorizontalAlignment, com.google.gwt.i18n.shared.HasDirectionEstimator, com.google.gwt.user.client.ui.HasWordWrap)
        • com.google.gwt.user.client.ui.Label (implements com.google.gwt.event.dom.client.HasAllDragAndDropHandlers, com.google.gwt.event.dom.client.HasAllGestureHandlers, com.google.gwt.event.dom.client.HasAllMouseHandlers, com.google.gwt.event.dom.client.HasAllTouchHandlers, com.google.gwt.event.dom.client.HasClickHandlers, com.google.gwt.i18n.client.HasDirection, com.google.gwt.user.client.ui.HasDirectionalText, com.google.gwt.event.dom.client.HasDoubleClickHandlers, com.google.gwt.editor.client.IsEditor<E>, com.google.gwt.user.client.ui.SourcesClickEvents, com.google.gwt.user.client.ui.SourcesMouseEvents)
          • org.utgenome.gwt.utgb.client.ui.FixedWidthLabel
          • org.utgenome.gwt.utgb.client.ui.FormLabel
      • com.google.gwt.user.client.ui.Panel (implements com.google.gwt.user.client.ui.HasWidgets.ForIsWidget)
        • com.google.gwt.user.client.ui.ComplexPanel (implements com.google.gwt.user.client.ui.IndexedPanel.ForIsWidget)
          • com.google.gwt.user.client.ui.AbsolutePanel (implements com.google.gwt.user.client.ui.InsertPanel.ForIsWidget)
            • org.utgenome.gwt.utgb.client.ui.AbsoluteFocusPanel (implements com.google.gwt.event.dom.client.HasMouseDownHandlers, com.google.gwt.event.dom.client.HasMouseMoveHandlers)
          • com.google.gwt.user.client.ui.CellPanel
            • com.google.gwt.user.client.ui.HorizontalPanel (implements com.google.gwt.user.client.ui.HasAlignment, com.google.gwt.user.client.ui.InsertPanel.ForIsWidget)
              • org.utgenome.gwt.widget.client.impl.IconSetPanel
            • com.google.gwt.user.client.ui.VerticalPanel (implements com.google.gwt.user.client.ui.HasAlignment, com.google.gwt.user.client.ui.InsertPanel.ForIsWidget)
              • org.utgenome.gwt.ribbon.client.ui.WeaverMainFrame.TrackListPanel
        • com.google.gwt.user.client.ui.SimplePanel (implements com.google.gwt.user.client.ui.HasOneWidget)
          • com.google.gwt.user.client.ui.FocusPanel (implements com.google.gwt.event.dom.client.HasAllDragAndDropHandlers, com.google.gwt.event.dom.client.HasAllFocusHandlers, com.google.gwt.event.dom.client.HasAllGestureHandlers, com.google.gwt.event.dom.client.HasAllKeyHandlers, com.google.gwt.event.dom.client.HasAllMouseHandlers, com.google.gwt.event.dom.client.HasAllTouchHandlers, com.google.gwt.event.dom.client.HasClickHandlers, com.google.gwt.event.dom.client.HasDoubleClickHandlers, com.google.gwt.user.client.ui.HasFocus, com.google.gwt.user.client.ui.SourcesClickEvents, com.google.gwt.user.client.ui.SourcesMouseEvents, com.google.gwt.user.client.ui.SourcesMouseWheelEvents)
            • org.utgenome.gwt.widget.client.Icon
            • org.utgenome.gwt.widget.client.Switch
              • org.utgenome.gwt.widget.client.NowLoadingIcon
            • org.utgenome.gwt.ipad.client.TouchableFocusPanel (implements org.utgenome.gwt.ipad.event.HasTouchHandlers)
          • com.google.gwt.user.client.ui.PopupPanel (implements com.google.gwt.user.client.EventPreview, com.google.gwt.user.client.ui.HasAnimation, com.google.gwt.event.logical.shared.HasCloseHandlers<T>, com.google.gwt.user.client.ui.SourcesPopupEvents)
            • org.utgenome.gwt.utgb.client.track.TrackConfig
            • org.utgenome.gwt.utgb.client.ui.WindowBox (implements org.utgenome.gwt.utgb.client.ui.SourcesWindowEvents)
          • org.utgenome.gwt.utgb.client.track.TrackFrame
  • org.utgenome.gwt.utgb.client.UTGB
  • org.utgenome.core.cui.UTGBCommandBase (implements org.xerial.util.opt.Command)
    • org.utgenome.core.cui.Convert
    • org.utgenome.core.cui.DrawHistogram
    • org.utgenome.core.cui.ImportBustard
    • org.utgenome.core.cui.ReadStat
    • org.utgenome.core.cui.SAM2Silk
    • org.utgenome.core.cui.ScreenShot
    • org.utgenome.core.cui.Snappy
    • org.utgenome.shell.UTGBShellCommandBase
      • org.utgenome.shell.UTGBShellCommand (implements java.lang.Comparable<T>)
        • org.utgenome.shell.AddAction
        • org.utgenome.shell.Clean
        • org.utgenome.shell.Compile
        • org.utgenome.shell.Create
        • org.utgenome.shell.Deploy
        • org.utgenome.shell.Eclipse
        • org.utgenome.shell.FastqRename
        • org.utgenome.shell.FastqToFasta
        • org.utgenome.shell.FastqToSAM
        • org.utgenome.shell.GWT
        • org.utgenome.shell.GWTCompile
        • org.utgenome.shell.Illumina2Fastq
        • org.utgenome.shell.Import
        • org.utgenome.shell.Keyword
        • org.utgenome.shell.Maven
        • org.utgenome.shell.Pack
        • org.utgenome.shell.QSeqToFastq
        • org.utgenome.shell.Repair
        • org.utgenome.shell.Sam2Wig
        • org.utgenome.shell.SAMToFastq
        • org.utgenome.shell.Sequence
        • org.utgenome.shell.Server
        • org.utgenome.shell.SVNAdd
        • org.utgenome.shell.Upgrade
  • org.utgenome.config.UTGBConfig
  • org.utgenome.config.UTGBConfig.Database
  • org.utgenome.config.UTGBConfig.WebAction
  • org.utgenome.gwt.widget.client.UTGBDesignFactory
  • org.utgenome.gwt.utgb.client.UTGBEntryPointBase (implements com.google.gwt.core.client.EntryPoint)
  • org.utgenome.gwt.utgb.client.UTGBEntryPointBase.KeyboardShortcut (implements com.google.gwt.user.client.Event.NativePreviewHandler)
  • org.utgenome.gwt.utgb.server.UTGBMaster (implements javax.servlet.ServletContextListener)
  • org.utgenome.shell.UTGBPortable
  • org.utgenome.shell.UTGBPortableConfig
  • org.utgenome.shell.UTGBShell
  • org.utgenome.gwt.utgb.client.track.lib.old.Utilities
  • org.utgenome.gwt.utgb.client.db.Value (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.gwt.utgb.client.db.ValueDomain (implements com.google.gwt.user.client.rpc.IsSerializable)
  • org.utgenome.format.egt.ValueParameter (implements org.utgenome.format.egt.Parameter)
  • org.utgenome.util.sv.VariationAnnotator
  • org.utgenome.gwt.utgb.server.util.WebApplicationResource
  • org.utgenome.shell.WebBrowser
  • org.utgenome.gwt.utgb.client.ui.WidgetDesign
  • org.utgenome.format.wig.WIG2Silk
  • org.utgenome.format.wig.WIG2Silk.WIGHeaderAttribute
  • org.utgenome.format.wig.WIG2Silk.WIGHeaderDescription
  • org.utgenome.format.wig.WIGDatabaseGenerator
  • org.utgenome.format.wig.WIGDatabaseGenerator.WIGHeaderAttribute
  • org.utgenome.format.wig.WIGDatabaseGenerator.WIGHeaderDescription
  • org.utgenome.format.wig.WIGDatabaseReader
  • org.utgenome.format.wig.WIGDatabaseReader.AvgSelector
  • org.utgenome.format.wig.WIGDatabaseReader.MAXSelector
  • org.utgenome.format.wig.WIGDatabaseReader.MedianSelector
  • org.utgenome.format.wig.WIGDatabaseReader.MINSelector
  • org.utgenome.gwt.utgb.client.bio.WigGraphData (implements java.io.Serializable)
  • org.utgenome.gwt.utgb.client.util.Worker (implements com.google.gwt.user.client.Command)
  • org.utgenome.gwt.utgb.client.util.Worker.WorkerCallback (implements com.google.gwt.user.client.rpc.AsyncCallback<T>)
  • org.utgenome.gwt.utgb.client.util.WorkQueue (implements com.google.gwt.user.client.Command)
  • org.utgenome.gwt.utgb.client.util.xml.XMLAttribute
  • org.utgenome.gwt.utgb.client.util.xml.XMLUtil
  • org.utgenome.gwt.utgb.client.util.xml.XMLWriter

Interface Hierarchy

• org.utgenome.gwt.utgb.server.ActionPackage
• org.utgenome.format.bed.BEDQuery
• org.utgenome.gwt.utgb.client.BrowserServiceAsync
• com.google.gwt.resources.client.ClientBundle
  • org.utgenome.gwt.widget.client.UTGBImageBundle
• org.utgenome.format.fasta.CompactFASTA.PacFileAccess
• org.utgenome.shell.Create.ScaffoldFileFilter
• org.utgenome.gwt.utgb.client.db.datatype.DataType
• com.google.gwt.event.shared.EventHandler
  • org.utgenome.gwt.ipad.event.TouchCancelHandler
  • org.utgenome.gwt.ipad.event.TouchEndHandler
  • org.utgenome.gwt.ipad.event.TouchMoveHandler
  • org.utgenome.gwt.ipad.event.TouchStartHandler
• org.utgenome.gwt.utgb.client.ui.Frame
• org.utgenome.gwt.utgb.client.ui.FrameButtonListener
• org.utgenome.gwt.utgb.client.track.operation.FrameCommand
• org.utgenome.gwt.utgb.client.bio.GenomeRangeVisitor
• org.utgenome.format.fasta.GenomeSequence
• org.utgenome.gwt.ipad.event.HasTouchHandlers
• org.utgenome.gwt.widget.client.ImageLoader.CallBack
• org.utgenome.gwt.utgb.client.canvas.LocusClickHandler
• org.utgenome.format.ObjectStreamReader.TextFormatToObjectMapper
• org.utgenome.gwt.utgb.client.track.operation.Operation
• org.utgenome.format.fasta.OverlappingKmerIterator
• org.utgenome.format.egt.Parameter
• org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree.ResultHandler<E>
• org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree.Visitor<E>
• org.utgenome.util.aligner.RandomAccess
• org.utgenome.gwt.utgb.client.track.RangeSelectable
• org.utgenome.util.ReadDepth.DepthOutput
• org.utgenome.format.sam.ReadSweeper.ReadSetHandler<T>
• com.google.gwt.user.client.rpc.RemoteService
  • org.utgenome.gwt.utgb.client.BrowserService
• org.utgenome.gwt.utgb.server.RequestHandler
• org.utgenome.gwt.utgb.server.RequestMap
• org.utgenome.format.sam.SAMReader.SAMReadFactory
• java.io.Serializable
  • org.utgenome.gwt.utgb.client.bio.GenomeRange
    • org.utgenome.gwt.utgb.client.bio.GraphData
  • org.utgenome.gwt.utgb.client.bio.GraphData
• org.utgenome.shell.ServerListener
• org.utgenome.gwt.utgb.client.ui.SourcesWidgetSizeChanges
• org.utgenome.gwt.utgb.client.ui.SourcesWindowEvents
• org.utgenome.gwt.utgb.client.ui.tab.TabEventListener
• org.utgenome.gwt.utgb.client.ui.TableChangeListener
• org.utgenome.gwt.utgb.server.util.xml.TextContentFilter
• org.utgenome.gwt.widget.client.TrackButtonListener
• org.utgenome.gwt.utgb.client.track.TrackConfigChange
• org.utgenome.gwt.utgb.client.track.TrackEntry
  • org.utgenome.gwt.utgb.client.track.Track (also extends org.utgenome.gwt.utgb.client.track.TrackGroupPropertyChangeListener)
• org.utgenome.gwt.utgb.client.track.TrackGroupProperty
  • org.utgenome.gwt.utgb.client.track.TrackGroupPropertyChange
• org.utgenome.gwt.utgb.client.track.TrackGroupPropertyChangeListener
  • org.utgenome.gwt.utgb.client.track.Track (also extends org.utgenome.gwt.utgb.client.track.TrackEntry)
• org.utgenome.gwt.utgb.client.track.TrackGroupPropertyWriter
• org.utgenome.gwt.utgb.client.track.TrackInfoChangeListener
• org.utgenome.gwt.utgb.client.track.TrackLayoutManager
• org.utgenome.gwt.widget.client.TrackPanel
• org.utgenome.gwt.utgb.client.track.TrackUpdateListener
• org.utgenome.gwt.utgb.client.track.UTGBProperty
• org.utgenome.gwt.utgb.client.ui.WidgetSizeChangeListener
• org.utgenome.gwt.utgb.client.ui.WindowListener

Annotation Type Hierarchy

• org.utgenome.gwt.utgb.server.ActionPackageAlias (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.utgenome.UTGBErrorCode
    • org.utgenome.util.sv.GeneticVariation.VariationType
    • org.utgenome.util.sv.EnhancedGeneticVariation.MutationType
    • org.utgenome.util.sv.EnhancedGeneticVariation.MutationPosition
    • org.utgenome.format.blast.Blast2Silk.BlastResult.BlastAlignment.Strand
    • org.utgenome.format.gff3.SOFA
    • org.utgenome.format.egt.EGTXMLReader.Opt
    • org.utgenome.gwt.utgb.client.bio.GenomeDB.DBType
    • org.utgenome.gwt.utgb.client.bio.CIGAR.Type (implements java.io.Serializable)
    • org.utgenome.gwt.utgb.client.bio.GraphWindow
    • org.utgenome.gwt.utgb.client.bio.Read.ReadType
    • org.utgenome.gwt.utgb.client.bio.AminoAcid
    • org.utgenome.gwt.utgb.client.bio.IUPAC
    • org.utgenome.gwt.utgb.client.bio.ReadQueryConfig.Layout
    • org.utgenome.gwt.utgb.client.canvas.GWTGenomeCanvas.CoverageStyle
    • org.utgenome.gwt.utgb.client.util.BrowserInfo.Agent
    • org.utgenome.gwt.utgb.client.UTGBClientErrorCode (implements java.io.Serializable)
    • org.utgenome.gwt.utgb.client.ui.MessageType
    • org.utgenome.gwt.utgb.client.ribbon.Ribbon.CreaseType
    • org.utgenome.gwt.ribbon.client.model.Ribbon.RibbonSegment.SegmentType
    • org.utgenome.shell.Keyword.SubCommand
    • org.utgenome.shell.Create.OverwriteMode
    • org.utgenome.shell.OSType
    • org.utgenome.shell.Import.FileType
    • org.utgenome.shell.UTGBPortableWidget.MessageType