org.utgenome.gwt.utgb.server.app
Class CSEGViewer.GraphicalOutput

java.lang.Object
  org.utgenome.gwt.utgb.server.app.CSEGViewer.GraphicalOutput

All Implemented Interfaces:

org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

Enclosing class:

CSEGViewer

public class CSEGViewer.GraphicalOutput
extends Object
implements org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

Field Summary

protected GenomeCanvas	canvas
protected Color[]	colors
protected long	endOffset
int	processed_records
protected Color	scale_color
protected long	startOffset
protected int	width

Constructor Summary

CSEGViewer.GraphicalOutput(javax.servlet.http.HttpServletResponse response, long start, long end, int width, int height)

Method Summary

void	finish()
void	handle(CSEGViewer.SEGData sd)
void	handleException(Exception e)
void	init()
void	setColors(String colorString)
void	setDrawScale(int integerParameter)
void	setFont_size(double font_size)
void	setIs_drawing_priority_indicies(boolean is_drawing_priority_indicies)
void	setParam_height_per_sample(int param_height_per_sample)
void	setParam_samples_per_scale(int param_samples_per_scale)
void	setPriorityIndicies(String r)
void	setScaleColor(String colorString)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

canvas

protected final GenomeCanvas canvas

startOffset

protected long startOffset

endOffset

protected long endOffset

width

protected int width

colors

protected Color[] colors

scale_color

protected Color scale_color

processed_records

public int processed_records

Constructor Detail

CSEGViewer.GraphicalOutput

public CSEGViewer.GraphicalOutput(javax.servlet.http.HttpServletResponse response,
                                  long start,
                                  long end,
                                  int width,
                                  int height)

Method Detail

setIs_drawing_priority_indicies

public void setIs_drawing_priority_indicies(boolean is_drawing_priority_indicies)

setParam_height_per_sample

public void setParam_height_per_sample(int param_height_per_sample)

setParam_samples_per_scale

public void setParam_samples_per_scale(int param_samples_per_scale)

setFont_size

public void setFont_size(double font_size)

setDrawScale

public void setDrawScale(int integerParameter)

setPriorityIndicies

public void setPriorityIndicies(String r)

setColors

public void setColors(String colorString)

Parameters:

colorString - (e.g., '33ffcc,ff3366'; then 0 is mapped to #33ffcc, 1 to #ff3366. do not include any space characters)

setScaleColor

public void setScaleColor(String colorString)

handle

public void handle(CSEGViewer.SEGData sd)
            throws SQLException

Specified by:

handle in interface org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

Throws:

SQLException

init

public void init()

Specified by:

init in interface org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

finish

public void finish()

Specified by:

finish in interface org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

handleException

public void handleException(Exception e)
                     throws Exception

Specified by:

handleException in interface org.xerial.db.sql.BeanResultHandler<CSEGViewer.SEGData>

Throws:

Exception