org.utgenome.format.fasta
Class CompactFASTA.OnMemoryBuffer

java.lang.Object
  org.utgenome.format.fasta.CompactFASTA.OnMemoryBuffer

All Implemented Interfaces:

CompactFASTA.PacFileAccess

Enclosing class:

CompactFASTA

public class CompactFASTA.OnMemoryBuffer
extends Object
implements CompactFASTA.PacFileAccess

Constructor Summary

CompactFASTA.OnMemoryBuffer(File pacFile, File pacNFile)

Method Summary

void	close()
void	readNSeq(long cursor, byte[] buf)
void	readSeq(long cursor, byte[] buf)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactFASTA.OnMemoryBuffer

public CompactFASTA.OnMemoryBuffer(File pacFile,
                                   File pacNFile)
                            throws IOException

Throws:

IOException

Method Detail

readSeq

public void readSeq(long cursor,
                    byte[] buf)
             throws IOException

Specified by:

readSeq in interface CompactFASTA.PacFileAccess

Throws:

IOException

readNSeq

public void readNSeq(long cursor,
                     byte[] buf)
              throws IOException

Specified by:

readNSeq in interface CompactFASTA.PacFileAccess

Throws:

IOException

close

public void close()
           throws IOException

Specified by:

close in interface CompactFASTA.PacFileAccess

Throws:

IOException