org.utgenome.format.fastq
Class FastqRead

java.lang.Object
  org.utgenome.format.fastq.FastqRead

public class FastqRead
extends Object

An entry of FASTQ format

Author:

leo

Field Summary

String	qual
String	seq
String	seqname

Constructor Summary

FastqRead()

FastqRead(String seqname, String seq, String qual)

Method Summary

static FastqRead	parse(BufferedReader reader)
String	toFASTQString()
String	toSilk()
void	toSilk(org.xerial.silk.SilkWriter silk)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

seqname

public String seqname

seq

public String seq

qual

public String qual

Constructor Detail

FastqRead

public FastqRead()

FastqRead

public FastqRead(String seqname,
                 String seq,
                 String qual)

Method Detail

toFASTQString

public String toFASTQString()

parse

public static FastqRead parse(BufferedReader reader)
                       throws UTGBException

Throws:

UTGBException

toSilk

public void toSilk(org.xerial.silk.SilkWriter silk)

toSilk

public String toSilk()