org.utgenome.format.axt
Class AXTAlignment

java.lang.Object
  org.utgenome.format.axt.AXTAlignment

public class AXTAlignment
extends Object

Record in AXT format

Author:

leo

Field Summary

String	aligningAssembly
String	d_chr
int	d_end
int	d_start
int	num
String	primaryAssembly
String	s_chr
int	s_end
int	s_start
int	score
String	strand

Constructor Summary

AXTAlignment()

Method Summary

boolean	equals(Object obj)
void	toAXT(Writer out)

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

num

public int num

s_chr

public String s_chr

s_start

public int s_start

s_end

public int s_end

d_chr

public String d_chr

d_start

public int d_start

d_end

public int d_end

strand

public String strand

score

public int score

primaryAssembly

public String primaryAssembly

aligningAssembly

public String aligningAssembly

Constructor Detail

AXTAlignment

public AXTAlignment()

Method Detail

toAXT

public void toAXT(Writer out)
           throws IOException

Throws:

IOException

equals

public boolean equals(Object obj)

Overrides:

equals in class Object