org.utgenome.gwt.utgb.server.app
Class MethylViewer.MethlEntry

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Read
          org.utgenome.gwt.utgb.server.app.MethylViewer.MethlEntry

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

Enclosing class:

MethylViewer

public static class MethylViewer.MethlEntry
extends Read

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read

Read.ReadType

Field Summary

int	frequency
String	genome
int	numCtoT
int	numOtherMismatch
String	scaffold
String	tag

Constructor Summary

MethylViewer.MethlEntry()

Method Summary

org.xerial.util.Pair<List<Integer>,List<Integer>>	getMPos() list of C-C and C-T positions
void	setFrequency(int frequency)
void	setGenome(String genome)
void	setNumCtoT(int numCtoT)
void	setNumOtherMismatch(int numOtherMismatch)
void	setScaffold(String scaffold)
void	setTag(String tag)

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read

accept, downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

scaffold

public String scaffold

genome

public String genome

tag

public String tag

frequency

public int frequency

numCtoT

public int numCtoT

numOtherMismatch

public int numOtherMismatch

Constructor Detail

MethylViewer.MethlEntry

public MethylViewer.MethlEntry()

Method Detail

getMPos

public org.xerial.util.Pair<List<Integer>,List<Integer>> getMPos()

list of C-C and C-T positions

Returns:

setScaffold

public void setScaffold(String scaffold)

setGenome

public void setGenome(String genome)

setTag

public void setTag(String tag)

setFrequency

public void setFrequency(int frequency)

setNumCtoT

public void setNumCtoT(int numCtoT)

setNumOtherMismatch

public void setNumOtherMismatch(int numOtherMismatch)