org.utgenome.format.keyword
Class KeywordAliasReader

java.lang.Object
  org.utgenome.format.keyword.KeywordAliasReader

public class KeywordAliasReader
extends Object

keyword alias file is a tab-delimited file, each line of which has a keyword and its aliases.

 # comment line
 (keyword1)     (aliases... )
 (keyword2)     (aliases... )
 ...
 

Author:

leo

Constructor Summary

KeywordAliasReader(Reader in)

KeywordAliasReader(String file)

Method Summary

GenomeKeywordEntry.KeywordAlias

next() read a next keyword and its aliases

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KeywordAliasReader

public KeywordAliasReader(String file)
                   throws FileNotFoundException

Throws:

FileNotFoundException

KeywordAliasReader

public KeywordAliasReader(Reader in)

Method Detail

next

public GenomeKeywordEntry.KeywordAlias next()
                                     throws IOException

read a next keyword and its aliases

Returns:

KeywordAlias or null if no further entry exists

Throws:

IOException