org.utgenome.format.silk.read
Class Reference

java.lang.Object
  org.utgenome.format.silk.read.Reference

Direct Known Subclasses:

ReadDBBuilder.ReferenceReader

public class Reference
extends Object

Reference Sequence

Author:

leo

Field Summary

String	name
long	s2ed
long	s2st
String	s2strand
int	score
long	start
String	strand
int	tag

Constructor Summary

Reference()

Method Summary

void	addRead(Read read)
void	appendSequence(String sequence)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

public String name

start

public long start

strand

public String strand

tag

public int tag

s2st

public long s2st

s2ed

public long s2ed

s2strand

public String s2strand

score

public int score

Constructor Detail

Reference

public Reference()

Method Detail

addRead

public void addRead(Read read)

appendSequence

public void appendSequence(String sequence)