org.utgenome.gwt.utgb.client.canvas
Class IntervalLayout.IntervalRetriever
java.lang.Object
org.utgenome.gwt.utgb.client.bio.GenomeRangeVisitorBase
org.utgenome.gwt.utgb.client.canvas.IntervalLayout.IntervalRetriever
- All Implemented Interfaces:
- GenomeRangeVisitor
- Enclosing class:
- IntervalLayout
public static class IntervalLayout.IntervalRetriever
- extends GenomeRangeVisitorBase
Retrieves the interval (x1, x2) and the height of OnGenome objects
- Author:
- leo
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
allowPEOverlap
public boolean allowPEOverlap
start
public int start
end
public int end
height
public int height
isDefined
public boolean isDefined
IntervalLayout.IntervalRetriever
public IntervalLayout.IntervalRetriever()
clear
public void clear()
visitInterval
public void visitInterval(Interval interval)
- Specified by:
visitInterval
in interface GenomeRangeVisitor
- Overrides:
visitInterval
in class GenomeRangeVisitorBase
visitSAMReadLight
public void visitSAMReadLight(SAMReadLight r)
- Specified by:
visitSAMReadLight
in interface GenomeRangeVisitor
- Overrides:
visitSAMReadLight
in class GenomeRangeVisitorBase
visitReadCoverage
public void visitReadCoverage(ReadCoverage readCoverage)
- Specified by:
visitReadCoverage
in interface GenomeRangeVisitor
- Overrides:
visitReadCoverage
in class GenomeRangeVisitorBase
visitSAMReadPairFragment
public void visitSAMReadPairFragment(SAMReadPairFragment fragment)
- Specified by:
visitSAMReadPairFragment
in interface GenomeRangeVisitor
- Overrides:
visitSAMReadPairFragment
in class GenomeRangeVisitorBase
visitSAMReadPair
public void visitSAMReadPair(SAMReadPair pair)
- Specified by:
visitSAMReadPair
in interface GenomeRangeVisitor
- Overrides:
visitSAMReadPair
in class GenomeRangeVisitorBase
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