org.utgenome.gwt.utgb.client.bio
Class BSSRead

java.lang.Object
  extended by org.utgenome.gwt.utgb.client.bio.Interval
      extended by org.utgenome.gwt.utgb.client.bio.Read
          extended by org.utgenome.gwt.utgb.client.bio.BSSRead
All Implemented Interfaces:
Serializable, Comparable<Interval>, GenomeRange

public class BSSRead
extends Read

BSS read data object

Author:
leo
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read
Read.ReadType
 
Field Summary
 String alignment
           
 int bitScore
           
 String evalue
           
 double queryCoverage
           
 int queryLength
           
 String querySequence
           
 double similarity
           
 String targetSequence
           
 
Constructor Summary
BSSRead()
           
 
Method Summary
 
Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read
accept, downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion
 
Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval
adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray, toString
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

queryLength

public int queryLength

similarity

public double similarity

queryCoverage

public double queryCoverage

evalue

public String evalue

bitScore

public int bitScore

targetSequence

public String targetSequence

querySequence

public String querySequence

alignment

public String alignment
Constructor Detail

BSSRead

public BSSRead()


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