org.utgenome.gwt.utgb.client.bio
Class BSSRead

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Read
          org.utgenome.gwt.utgb.client.bio.BSSRead

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class BSSRead
extends Read

BSS read data object

Author:

leo

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read

Read.ReadType

Field Summary

String	alignment
int	bitScore
String	evalue
double	queryCoverage
int	queryLength
String	querySequence
double	similarity
String	targetSequence

Constructor Summary

BSSRead()

Method Summary

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read

accept, downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

queryLength

public int queryLength

similarity

public double similarity

queryCoverage

public double queryCoverage

evalue

public String evalue

bitScore

public int bitScore

targetSequence

public String targetSequence

querySequence

public String querySequence

alignment

public String alignment

Constructor Detail

BSSRead

public BSSRead()