org.utgenome.graphics
Class RibbonCanvas

java.lang.Object
  org.utgenome.graphics.RibbonCanvas

public class RibbonCanvas
extends Object

genome drawing canvas supporting indel display

Author:

leo

Constructor Summary

RibbonCanvas(int width, int height, GenomeWindow window)

Method Summary

void	draw(Read read)
void	drawText(String text, long startIndexOnGenome, long endIndexOnGenome, int yOffset, int fontSize, Color color)
Color	getBaseColor(char base)
void	setPixelSize(int width, int height)
void	setReference(Reference reference)
void	toPNG(OutputStream out)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RibbonCanvas

public RibbonCanvas(int width,
                    int height,
                    GenomeWindow window)

Method Detail

getBaseColor

public Color getBaseColor(char base)

setPixelSize

public void setPixelSize(int width,
                         int height)

setReference

public void setReference(Reference reference)

draw

public void draw(Read read)

drawText

public void drawText(String text,
                     long startIndexOnGenome,
                     long endIndexOnGenome,
                     int yOffset,
                     int fontSize,
                     Color color)

toPNG

public void toPNG(OutputStream out)
           throws IOException

Throws:

IOException