org.utgenome.format.bed
Class BEDDatabase.BEDRangeQuery

java.lang.Object
  org.utgenome.format.bed.BEDDatabase.BEDRangeQuery

All Implemented Interfaces:

BEDQuery

Enclosing class:

BEDDatabase

public static class BEDDatabase.BEDRangeQuery
extends Object
implements BEDQuery

Field Summary

List<GenomeRange>	geneList
BEDTrack	track

Constructor Summary

BEDDatabase.BEDRangeQuery(List<GenomeRange> geneList, String coordinate, int start, int end)

Method Summary

void	addGene(BEDEntry gene)
void	addTrack(BEDTrack track)
void	reportError(Exception e)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

geneList

public List<GenomeRange> geneList

track

public BEDTrack track

Constructor Detail

BEDDatabase.BEDRangeQuery

public BEDDatabase.BEDRangeQuery(List<GenomeRange> geneList,
                                 String coordinate,
                                 int start,
                                 int end)

Method Detail

addGene

public void addGene(BEDEntry gene)

Specified by:

addGene in interface BEDQuery

addTrack

public void addTrack(BEDTrack track)

Specified by:

addTrack in interface BEDQuery

reportError

public void reportError(Exception e)

Specified by:

reportError in interface BEDQuery