org.utgenome.gwt.utgb.client
Interface BrowserServiceAsync

public interface BrowserServiceAsync

Method Summary

void	createTrackView(String silk, com.google.gwt.user.client.rpc.AsyncCallback<TrackView> callback)
void	getChildDBGroups(String parentDBGroup, com.google.gwt.user.client.rpc.AsyncCallback<List<String>> callback)
void	getChrRegion(String species, String revision, com.google.gwt.user.client.rpc.AsyncCallback<ChrRange> callback)
void	getCompactWigDataList(String fileName, int windowWidth, ChrLoc location, GraphWindow window, com.google.gwt.user.client.rpc.AsyncCallback<List<CompactWIGData>> callback)
void	getDatabaseCatalog(String jdbcAddress, com.google.gwt.user.client.rpc.AsyncCallback<String> callback)
void	getDBEntry(String dbGroup, com.google.gwt.user.client.rpc.AsyncCallback<List<DatabaseEntry>> callback)
void	getDBNames(String dbGroup, com.google.gwt.user.client.rpc.AsyncCallback<List<String>> callback)
void	getHTTPContent(String url, com.google.gwt.user.client.rpc.AsyncCallback<String> callback)
void	getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config, com.google.gwt.user.client.rpc.AsyncCallback<List<GenomeRange>> callback)
void	getRefSeq(String refSeqFileName, String rname, int start, int end, com.google.gwt.user.client.rpc.AsyncCallback<String> callback)
void	getSAMReadList(String readFileName, String refSeqFileName, com.google.gwt.user.client.rpc.AsyncCallback<List<SAMRead>> callback)
void	getTableData(String jdbcAddress, String tableName, com.google.gwt.user.client.rpc.AsyncCallback<String> callback)
void	getTrackList(int entriesPerPage, int page, com.google.gwt.user.client.rpc.AsyncCallback<List<TrackBean>> callback)
void	getTrackList(String prefix, int entriesPerPage, int page, com.google.gwt.user.client.rpc.AsyncCallback<List<TrackBean>> callback)
void	getTrackView(String viewName, com.google.gwt.user.client.rpc.AsyncCallback<TrackView> callback)
void	getWigDataList(String fileName, int windowWidth, ChrLoc location, com.google.gwt.user.client.rpc.AsyncCallback<List<WigGraphData>> callback)
void	keywordSearch(String species, String revision, String keyword, int entriesPerPage, int page, com.google.gwt.user.client.rpc.AsyncCallback<KeywordSearchResult> callback)
void	numHitsOfTracks(String prefix, com.google.gwt.user.client.rpc.AsyncCallback<Integer> callback)
void	querySAMReadList(String bamFileName, String indexFileName, String refSeqFileName, String rname, int start, int end, com.google.gwt.user.client.rpc.AsyncCallback<List<SAMRead>> callback)

Method Detail

createTrackView

void createTrackView(String silk,
                     com.google.gwt.user.client.rpc.AsyncCallback<TrackView> callback)

getTrackView

void getTrackView(String viewName,
                  com.google.gwt.user.client.rpc.AsyncCallback<TrackView> callback)

getHTTPContent

void getHTTPContent(String url,
                    com.google.gwt.user.client.rpc.AsyncCallback<String> callback)

getDatabaseCatalog

void getDatabaseCatalog(String jdbcAddress,
                        com.google.gwt.user.client.rpc.AsyncCallback<String> callback)

getTableData

void getTableData(String jdbcAddress,
                  String tableName,
                  com.google.gwt.user.client.rpc.AsyncCallback<String> callback)

getTrackList

void getTrackList(int entriesPerPage,
                  int page,
                  com.google.gwt.user.client.rpc.AsyncCallback<List<TrackBean>> callback)

numHitsOfTracks

void numHitsOfTracks(String prefix,
                     com.google.gwt.user.client.rpc.AsyncCallback<Integer> callback)

getTrackList

void getTrackList(String prefix,
                  int entriesPerPage,
                  int page,
                  com.google.gwt.user.client.rpc.AsyncCallback<List<TrackBean>> callback)

keywordSearch

void keywordSearch(String species,
                   String revision,
                   String keyword,
                   int entriesPerPage,
                   int page,
                   com.google.gwt.user.client.rpc.AsyncCallback<KeywordSearchResult> callback)

getChrRegion

void getChrRegion(String species,
                  String revision,
                  com.google.gwt.user.client.rpc.AsyncCallback<ChrRange> callback)

getChildDBGroups

void getChildDBGroups(String parentDBGroup,
                      com.google.gwt.user.client.rpc.AsyncCallback<List<String>> callback)

getDBNames

void getDBNames(String dbGroup,
                com.google.gwt.user.client.rpc.AsyncCallback<List<String>> callback)

getDBEntry

void getDBEntry(String dbGroup,
                com.google.gwt.user.client.rpc.AsyncCallback<List<DatabaseEntry>> callback)

getWigDataList

void getWigDataList(String fileName,
                    int windowWidth,
                    ChrLoc location,
                    com.google.gwt.user.client.rpc.AsyncCallback<List<WigGraphData>> callback)

getCompactWigDataList

void getCompactWigDataList(String fileName,
                           int windowWidth,
                           ChrLoc location,
                           GraphWindow window,
                           com.google.gwt.user.client.rpc.AsyncCallback<List<CompactWIGData>> callback)

getSAMReadList

void getSAMReadList(String readFileName,
                    String refSeqFileName,
                    com.google.gwt.user.client.rpc.AsyncCallback<List<SAMRead>> callback)

querySAMReadList

void querySAMReadList(String bamFileName,
                      String indexFileName,
                      String refSeqFileName,
                      String rname,
                      int start,
                      int end,
                      com.google.gwt.user.client.rpc.AsyncCallback<List<SAMRead>> callback)

getRefSeq

void getRefSeq(String refSeqFileName,
               String rname,
               int start,
               int end,
               com.google.gwt.user.client.rpc.AsyncCallback<String> callback)

getOnGenomeData

void getOnGenomeData(GenomeDB db,
                     ChrLoc range,
                     ReadQueryConfig config,
                     com.google.gwt.user.client.rpc.AsyncCallback<List<GenomeRange>> callback)