org.utgenome.gwt.utgb.client.bio
Class CompactWIGData

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.CompactWIGData

All Implemented Interfaces:

Serializable, GenomeRange, GraphData

public class CompactWIGData
extends Object
implements GraphData

See Also:

Serialized Form

Constructor Summary

CompactWIGData()

Method Summary

void	accept(GenomeRangeVisitor visitor)
ArrayList<String>	getBrowser()
float[]	getData()
int	getEnd() return 1-based end position of the data.
float	getMaxValue()
float	getMinValue()
String	getName()
int	getPixelSize()
int	getSpan()
int	getStart() return 1-based start position of the data.
int	getTrack_id()
HashMap<String,String>	getTrack()
boolean	isAntiSense()
boolean	isSense()
int	length() return the length of the data
void	setBrowser(ArrayList<String> browser)
void	setData(float[] data)
void	setMaxValue(float maxValue)
void	setMinValue(float minValue)
void	setSpan(int span)
void	setStart(int start)
void	setTrack_id(int track_id)
void	setTrack(HashMap<String,String> track)
ReadCoverage	toReadCoverage(ChrLoc loc)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CompactWIGData

public CompactWIGData()

Method Detail

toReadCoverage

public ReadCoverage toReadCoverage(ChrLoc loc)

getPixelSize

public int getPixelSize()

setSpan

public void setSpan(int span)

getSpan

public int getSpan()

setStart

public void setStart(int start)

getStart

public int getStart()

Description copied from interface: GenomeRange

return 1-based start position of the data. The interval represents [start, end). ([inclusive, exclusive))

Specified by:

getStart in interface GenomeRange

Returns:

getTrack_id

public int getTrack_id()

setTrack_id

public void setTrack_id(int track_id)

getMinValue

public float getMinValue()

setMinValue

public void setMinValue(float minValue)

getMaxValue

public float getMaxValue()

setMaxValue

public void setMaxValue(float maxValue)

getBrowser

public ArrayList<String> getBrowser()

setBrowser

public void setBrowser(ArrayList<String> browser)

getTrack

public HashMap<String,String> getTrack()

setTrack

public void setTrack(HashMap<String,String> track)

getData

public float[] getData()

setData

public void setData(float[] data)

toString

public String toString()

Overrides:

toString in class Object

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

getEnd

public int getEnd()

Description copied from interface: GenomeRange

return 1-based end position of the data. The interval represents [start, end). ([inclusive, exclusive))

Specified by:

getEnd in interface GenomeRange

Returns:

getName

public String getName()

Specified by:

getName in interface GenomeRange

length

public int length()

Description copied from interface: GenomeRange

return the length of the data

Specified by:

length in interface GenomeRange

Returns:

isSense

public boolean isSense()

Specified by:

isSense in interface GenomeRange

isAntiSense

public boolean isAntiSense()

Specified by:

isAntiSense in interface GenomeRange