org.utgenome.gwt.utgb.server.app
Class Sequence.XMLOutput

java.lang.Object
  org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase
      org.utgenome.gwt.utgb.server.app.Sequence.XMLOutput

All Implemented Interfaces:

org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Enclosing class:

Sequence

public static class Sequence.XMLOutput
extends Sequence.SequenceRetrieverBase

Output a sequence as XML

Author:

leo

Constructor Summary

Sequence.XMLOutput(PrintWriter writer, int start, int end, boolean isReverseStrand)

Method Summary

void	finish()
void	init()
void	output(String subSequence)

Methods inherited from class org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase

getComplement, getEnd, getStart, handle, handleException, isReverseStrand

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Sequence.XMLOutput

public Sequence.XMLOutput(PrintWriter writer,
                          int start,
                          int end,
                          boolean isReverseStrand)

Method Detail

init

public void init()

Specified by:

init in interface org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Overrides:

init in class Sequence.SequenceRetrieverBase

output

public void output(String subSequence)

Specified by:

output in class Sequence.SequenceRetrieverBase

finish

public void finish()

Specified by:

finish in interface org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Overrides:

finish in class Sequence.SequenceRetrieverBase