UTGB Toolkit 1.5.9-SNAPSHOT API

Packages

com.google.gwt.user.client.impl
org.utgenome
org.utgenome.config	UTGB's configuration data objects
org.utgenome.core.cui	CUI commands.
org.utgenome.format	parsers for various data formats
org.utgenome.format.agp
org.utgenome.format.axt
org.utgenome.format.bed
org.utgenome.format.blast
org.utgenome.format.cseg
org.utgenome.format.egt
org.utgenome.format.fasta	FASTA utilities
org.utgenome.format.fastq
org.utgenome.format.gff3
org.utgenome.format.illumina
org.utgenome.format.keyword
org.utgenome.format.legacy
org.utgenome.format.psl
org.utgenome.format.sam
org.utgenome.format.silk.read
org.utgenome.format.wig
org.utgenome.graphics	Graphics drawing classes
org.utgenome.gwt.ipad.client
org.utgenome.gwt.ipad.event
org.utgenome.gwt.ribbon.client
org.utgenome.gwt.ribbon.client.model
org.utgenome.gwt.ribbon.client.ui
org.utgenome.gwt.utgb	Genome browser client (web browser) and server (web server) packages
org.utgenome.gwt.utgb.client	UTGB Browser interface & track implementations.
org.utgenome.gwt.utgb.client.bean
org.utgenome.gwt.utgb.client.bean.track
org.utgenome.gwt.utgb.client.bio	Biological data objects for Google Web Toolkit RPC (Remote Procedure Call).
org.utgenome.gwt.utgb.client.canvas	Browser-side graphic drawing libraries using HTML canvas (or VML in IE).
org.utgenome.gwt.utgb.client.db	widgets and bean classes for viewing and updating database contents.
org.utgenome.gwt.utgb.client.db.datatype
org.utgenome.gwt.utgb.client.ribbon
org.utgenome.gwt.utgb.client.track
org.utgenome.gwt.utgb.client.track.bean
org.utgenome.gwt.utgb.client.track.impl
org.utgenome.gwt.utgb.client.track.lib	Standard track library for UTGB browser.
org.utgenome.gwt.utgb.client.track.lib.debug	Tracks for debug purpose
org.utgenome.gwt.utgb.client.track.lib.old	Old UTGB track library.
org.utgenome.gwt.utgb.client.track.lib.old.datatype
org.utgenome.gwt.utgb.client.track.operation
org.utgenome.gwt.utgb.client.ui
org.utgenome.gwt.utgb.client.ui.tab	Tabbed Panel
org.utgenome.gwt.utgb.client.ui.treeview
org.utgenome.gwt.utgb.client.util	Utilities supporting efficient development with Google Web Toolkit.
org.utgenome.gwt.utgb.client.util.xml
org.utgenome.gwt.utgb.client.view	Track view configuration
org.utgenome.gwt.utgb.server	UTGB's server-side libraries for supporting web request handling, managing database connections, initialization of UTGB web applications, etc.
org.utgenome.gwt.utgb.server.app	Contains sample codes of web actions.
org.utgenome.gwt.utgb.server.app.example
org.utgenome.gwt.utgb.server.util
org.utgenome.gwt.utgb.server.util.graphic
org.utgenome.gwt.utgb.server.util.xml
org.utgenome.gwt.widget.client
org.utgenome.gwt.widget.client.impl
org.utgenome.shell
org.utgenome.shell.tomcat
org.utgenome.util
org.utgenome.util.aligner
org.utgenome.util.kmer
org.utgenome.util.repeat
org.utgenome.util.sv