org.utgenome.format
Class FormatConversionReader

java.lang.Object
  java.io.Reader
      org.utgenome.format.FormatConversionReader

All Implemented Interfaces:

Closeable, Readable

Direct Known Subclasses:

BED2SilkReader, Blast2Silk, FastqToSilkReader, SAM2SilkReader, WIG2SilkReader

public class FormatConversionReader
extends Reader

A base class for converting an input format into another through a pipe.

Author:

leo

Nested Class Summary

static class

FormatConversionReader.PipeConsumer

Field Summary

Fields inherited from class java.io.Reader

lock

Constructor Summary

FormatConversionReader(InputStream input, FormatConversionReader.PipeConsumer worker)

FormatConversionReader(Reader input, FormatConversionReader.PipeConsumer worker)

Method Summary

void	close()
int	read(char[] cbuf, int off, int len)

Methods inherited from class java.io.Reader

mark, markSupported, read, read, read, ready, reset, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FormatConversionReader

public FormatConversionReader(Reader input,
                              FormatConversionReader.PipeConsumer worker)
                       throws IOException

Throws:

IOException

FormatConversionReader

public FormatConversionReader(InputStream input,
                              FormatConversionReader.PipeConsumer worker)
                       throws IOException

Throws:

IOException

Method Detail

close

public void close()
           throws IOException

Specified by:

close in interface Closeable

Specified by:

close in class Reader

Throws:

IOException

read

public int read(char[] cbuf,
                int off,
                int len)
         throws IOException

Specified by:

read in class Reader

Throws:

IOException