org.utgenome.gwt.utgb.client.bio
Class BlastResult

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Read
          org.utgenome.gwt.utgb.client.bio.BlastResult

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class BlastResult
extends Read

Read with cigar and sequence information

Author:

leo

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read

Read.ReadType

Field Summary

int	bitScore
String	cigar
String	eValue
int	identity
int	matchLength
String	seq
Properties	tag

Constructor Summary

BlastResult()

Method Summary

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read

accept, downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

seq

public String seq

cigar

public String cigar

bitScore

public int bitScore

eValue

public String eValue

identity

public int identity

matchLength

public int matchLength

tag

public Properties tag

Constructor Detail

BlastResult

public BlastResult()