org.utgenome.format.fasta
Class FASTASequence

java.lang.Object
  org.utgenome.format.fasta.FASTASequence

public class FASTASequence
extends Object

A FASTASequence represents an entry in FASTA files

Author:

leo

Constructor Summary

FASTASequence()

FASTASequence(String rawDescription, String sequence)

Method Summary

String	getDescriptionLine()
String	getSequence()
String	getSequenceName() Extract a sequence name from the description line
void	setSequence(String sequence)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

FASTASequence

public FASTASequence(String rawDescription,
                     String sequence)

Parameters:

_sequence -

_description -

FASTASequence

public FASTASequence()

Method Detail

getSequenceName

public String getSequenceName()

Extract a sequence name from the description line

Returns:

getDescriptionLine

public String getDescriptionLine()

getSequence

public String getSequence()

setSequence

public void setSequence(String sequence)

toString

public String toString()

Overrides:

toString in class Object