org.utgenome.gwt.utgb.client.bio
Interface GenomeRangeVisitor

All Known Implementing Classes:

GenomeRangeVisitorBase, InfoSilkGenerator, IntervalLayout.IntervalRetriever

public interface GenomeRangeVisitor

Visitor interface for traversing data mapped onto a genome sequence

Author:

leo

Method Summary

void	visitBEDGene(BEDGene g)
void	visitDefault(GenomeRange g)
void	visitGap(Gap p)
void	visitGene(Gene g)
void	visitGraph(GraphData graph)
void	visitInterval(Interval interval)
void	visitRead(Read r)
void	visitReadCoverage(ReadCoverage readCoverage)
void	visitReadList(ReadList readList)
void	visitSAMRead(SAMRead r)
void	visitSAMReadLight(SAMReadLight r)
void	visitSAMReadPair(SAMReadPair pair)
void	visitSAMReadPairFragment(SAMReadPairFragment fragment)
void	visitSequence(ReferenceSequence referenceSequence)

Method Detail

visitDefault

void visitDefault(GenomeRange g)

visitInterval

void visitInterval(Interval interval)

visitRead

void visitRead(Read r)

visitGap

void visitGap(Gap p)

visitGene

void visitGene(Gene g)

visitBEDGene

void visitBEDGene(BEDGene g)

visitSAMRead

void visitSAMRead(SAMRead r)

visitSAMReadLight

void visitSAMReadLight(SAMReadLight r)

visitSAMReadPair

void visitSAMReadPair(SAMReadPair pair)

visitSAMReadPairFragment

void visitSAMReadPairFragment(SAMReadPairFragment fragment)

visitSequence

void visitSequence(ReferenceSequence referenceSequence)

visitReadCoverage

void visitReadCoverage(ReadCoverage readCoverage)

visitGraph

void visitGraph(GraphData graph)

visitReadList

void visitReadList(ReadList readList)