org.utgenome.gwt.utgb.client.bio
Class GenomeRangeVisitorBase

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.GenomeRangeVisitorBase

All Implemented Interfaces:

GenomeRangeVisitor

Direct Known Subclasses:

InfoSilkGenerator, IntervalLayout.IntervalRetriever

public class GenomeRangeVisitorBase
extends Object
implements GenomeRangeVisitor

Refereece implementation of the GenomeRangeVisitor. This visitor redirects the visiting event to the parent class of each data type.

Author:

leo

Constructor Summary

GenomeRangeVisitorBase()

Method Summary

void	visitBEDGene(BEDGene g)
void	visitDefault(GenomeRange g)
void	visitGap(Gap p)
void	visitGene(Gene g)
void	visitGraph(GraphData graph)
void	visitInterval(Interval interval)
void	visitRead(Read r)
void	visitReadCoverage(ReadCoverage readCoverage)
void	visitReadList(ReadList readList)
void	visitSAMRead(SAMRead r)
void	visitSAMReadLight(SAMReadLight r)
void	visitSAMReadPair(SAMReadPair pair)
void	visitSAMReadPairFragment(SAMReadPairFragment fragment)
void	visitSequence(ReferenceSequence referenceSequence)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomeRangeVisitorBase

public GenomeRangeVisitorBase()

Method Detail

visitDefault

public void visitDefault(GenomeRange g)

Specified by:

visitDefault in interface GenomeRangeVisitor

visitGap

public void visitGap(Gap p)

Specified by:

visitGap in interface GenomeRangeVisitor

visitGene

public void visitGene(Gene g)

Specified by:

visitGene in interface GenomeRangeVisitor

visitBEDGene

public void visitBEDGene(BEDGene g)

Specified by:

visitBEDGene in interface GenomeRangeVisitor

visitInterval

public void visitInterval(Interval interval)

Specified by:

visitInterval in interface GenomeRangeVisitor

visitRead

public void visitRead(Read r)

Specified by:

visitRead in interface GenomeRangeVisitor

visitReadCoverage

public void visitReadCoverage(ReadCoverage readCoverage)

Specified by:

visitReadCoverage in interface GenomeRangeVisitor

visitSAMRead

public void visitSAMRead(SAMRead r)

Specified by:

visitSAMRead in interface GenomeRangeVisitor

visitSequence

public void visitSequence(ReferenceSequence referenceSequence)

Specified by:

visitSequence in interface GenomeRangeVisitor

visitGraph

public void visitGraph(GraphData graph)

Specified by:

visitGraph in interface GenomeRangeVisitor

visitSAMReadPair

public void visitSAMReadPair(SAMReadPair pair)

Specified by:

visitSAMReadPair in interface GenomeRangeVisitor

visitSAMReadPairFragment

public void visitSAMReadPairFragment(SAMReadPairFragment fragment)

Specified by:

visitSAMReadPairFragment in interface GenomeRangeVisitor

visitReadList

public void visitReadList(ReadList readList)

Specified by:

visitReadList in interface GenomeRangeVisitor

visitSAMReadLight

public void visitSAMReadLight(SAMReadLight r)

Specified by:

visitSAMReadLight in interface GenomeRangeVisitor