org.utgenome.gwt.utgb.client.bio
Class SAMReadPairFragment
java.lang.Object
org.utgenome.gwt.utgb.client.bio.Interval
org.utgenome.gwt.utgb.client.bio.SAMReadPairFragment
- All Implemented Interfaces:
- Serializable, Comparable<Interval>, GenomeRange
public class SAMReadPairFragment
- extends Interval
Paired-end reads without the other mate data
- Author:
- leo
- See Also:
- Serialized Form
Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval |
adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray, toString |
oneEnd
public SAMReadLight oneEnd
mateStart
public int mateStart
SAMReadPairFragment
public SAMReadPairFragment()
SAMReadPairFragment
public SAMReadPairFragment(SAMReadLight oneEnd,
int mateStart)
getName
public String getName()
- Specified by:
getName
in interface GenomeRange
- Overrides:
getName
in class Interval
getGap
public Gap getGap()
accept
public void accept(GenomeRangeVisitor visitor)
- Specified by:
accept
in interface GenomeRange
- Overrides:
accept
in class Interval
Copyright © 2007-2012 utgenome.org. All Rights Reserved.