org.utgenome.gwt.utgb.client.bio
Class Gap

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Gap

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class Gap
extends Interval

Gap of paired-end, mate-pair reads

Author:

leo

See Also:

Serialized Form

Constructor Summary

Gap()

Gap(int start, int end)

Method Summary

void	accept(GenomeRangeVisitor visitor)

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getName, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Gap

public Gap()

Gap

public Gap(int start,
           int end)

Method Detail

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

Overrides:

accept in class Interval