org.utgenome.gwt.utgb.client.canvas
Class SAMCanvas

java.lang.Object
  com.google.gwt.user.client.ui.UIObject
      com.google.gwt.user.client.ui.Widget
          com.google.gwt.user.client.ui.Composite
              org.utgenome.gwt.utgb.client.canvas.SAMCanvas

All Implemented Interfaces:

com.google.gwt.event.logical.shared.HasAttachHandlers, com.google.gwt.event.shared.HasHandlers, com.google.gwt.user.client.EventListener, com.google.gwt.user.client.ui.HasVisibility, com.google.gwt.user.client.ui.IsRenderable, com.google.gwt.user.client.ui.IsWidget

public class SAMCanvas
extends com.google.gwt.user.client.ui.Composite

Text Alignment Viewer using SAM format data

Author:

yoshimura

Nested Class Summary

Nested classes/interfaces inherited from class com.google.gwt.user.client.ui.UIObject

com.google.gwt.user.client.ui.UIObject.DebugIdImpl, com.google.gwt.user.client.ui.UIObject.DebugIdImplEnabled

Field Summary

Fields inherited from class com.google.gwt.user.client.ui.UIObject

DEBUG_ID_PREFIX

Constructor Summary

SAMCanvas()

Method Summary

void	clear()
int	countNucleotides(String cigar)
void	drawLabelPanel(int count, SAMRead read, com.google.gwt.user.client.ui.AbsolutePanel panel, int leftMargin)
void	drawLabelPanel(List<SAMRead> readList, com.google.gwt.user.client.ui.AbsolutePanel panel, int leftMargin)
void	drawSAMCanvas(int count, SAMRead read)
void	drawSAMRead(int count, SAMRead read)
void	drawSAMRead(List<SAMRead> readList)
String	getColorMode()
int	getReadWidth(String cigar)
boolean	isC2T()
void	setC2T(boolean isC2T)
void	setColorMode(String colorMode)
void	setPixelHeight(int height)
void	setPixelWidth(int width)
void	setWindow(TrackWindow w, int leftMargin)

Methods inherited from class com.google.gwt.user.client.ui.Composite

getWidget, initWidget, isAttached, onAttach, onBrowserEvent, onDetach, performDetachedInitialization, render, render, resolvePotentialElement, setWidget, wrapElement

Methods inherited from class com.google.gwt.user.client.ui.Widget

addAttachHandler, addBitlessDomHandler, addDomHandler, addHandler, asWidget, asWidgetOrNull, createHandlerManager, delegateEvent, doAttachChildren, doDetachChildren, fireEvent, getHandlerCount, getLayoutData, getParent, isOrWasAttached, onLoad, onUnload, removeFromParent, setLayoutData, sinkEvents

Methods inherited from class com.google.gwt.user.client.ui.UIObject

addStyleDependentName, addStyleName, ensureDebugId, ensureDebugId, ensureDebugId, getAbsoluteLeft, getAbsoluteTop, getElement, getOffsetHeight, getOffsetWidth, getStyleElement, getStyleName, getStyleName, getStylePrimaryName, getStylePrimaryName, getTitle, isVisible, isVisible, onEnsureDebugId, removeStyleDependentName, removeStyleName, setElement, setElement, setHeight, setPixelSize, setSize, setStyleDependentName, setStyleName, setStyleName, setStyleName, setStyleName, setStylePrimaryName, setStylePrimaryName, setTitle, setVisible, setVisible, setWidth, sinkBitlessEvent, toString, unsinkEvents

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SAMCanvas

public SAMCanvas()

Method Detail

isC2T

public boolean isC2T()

setC2T

public void setC2T(boolean isC2T)

getColorMode

public String getColorMode()

setColorMode

public void setColorMode(String colorMode)

clear

public void clear()

setWindow

public void setWindow(TrackWindow w,
                      int leftMargin)

setPixelHeight

public void setPixelHeight(int height)

setPixelWidth

public void setPixelWidth(int width)

drawSAMRead

public void drawSAMRead(int count,
                        SAMRead read)

drawSAMRead

public void drawSAMRead(List<SAMRead> readList)

drawSAMCanvas

public void drawSAMCanvas(int count,
                          SAMRead read)

drawLabelPanel

public void drawLabelPanel(int count,
                           SAMRead read,
                           com.google.gwt.user.client.ui.AbsolutePanel panel,
                           int leftMargin)

drawLabelPanel

public void drawLabelPanel(List<SAMRead> readList,
                           com.google.gwt.user.client.ui.AbsolutePanel panel,
                           int leftMargin)

countNucleotides

public int countNucleotides(String cigar)

getReadWidth

public int getReadWidth(String cigar)