Hierarchy For Package org.utgenome.format.fasta

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • org.utgenome.format.fasta.CompactACGT (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.format.fasta.CompactACGTWriter
  • org.utgenome.format.fasta.CompactFASTA
  • org.utgenome.format.fasta.CompactFASTA.OnDiskAccess (implements org.utgenome.format.fasta.CompactFASTA.PacFileAccess)
  • org.utgenome.format.fasta.CompactFASTA.OnMemoryBuffer (implements org.utgenome.format.fasta.CompactFASTA.PacFileAccess)
  • org.utgenome.format.fasta.CompactFASTAGenerator
  • org.utgenome.format.fasta.CompactFASTAIndex
  • org.utgenome.format.fasta.FASTA
  • org.utgenome.format.fasta.FASTA.RawStringWrapper (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.format.fasta.FASTADatabase
  • org.utgenome.format.fasta.FASTADatabase.Config
  • org.utgenome.format.fasta.FASTADatabase.NSeq
  • org.utgenome.format.fasta.FASTAPullParser
  • org.utgenome.format.fasta.FASTASequence
  • org.utgenome.format.fasta.Kmer (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase (implements org.xerial.db.sql.BeanResultHandler<T>)
    • org.utgenome.format.fasta.FASTADatabase.TextOutput

Interface Hierarchy

• org.utgenome.format.fasta.CompactFASTA.PacFileAccess
• org.utgenome.format.fasta.GenomeSequence
• org.utgenome.format.fasta.OverlappingKmerIterator