org.utgenome.graphics
Class GenomeWindow

java.lang.Object
  org.utgenome.graphics.GenomeWindow

public class GenomeWindow
extends Object

Field Summary

long	endIndexOnGenome
long	startIndexOnGenome

Constructor Summary

GenomeWindow(long startIndexOnGenome, long endIndexOnGenome)

Method Summary

int	calcGenomePosition(int xOnWindow, int windowWidth)
long	getGenomeRange()
boolean	getReverse()
int	getXPosOnWindow(long indexOnGenome, int canvasWidth)
boolean	hasOverlap(long startOnGenome, long endOnGenome)
int	pixelPositionOnWindow(long indexOnGenome, int windowWidth)
int	toGenomeLength(int pixelLength, int windowWidth)
static long	width(long x1, long x2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

startIndexOnGenome

public final long startIndexOnGenome

endIndexOnGenome

public final long endIndexOnGenome

Constructor Detail

GenomeWindow

public GenomeWindow(long startIndexOnGenome,
                    long endIndexOnGenome)

Method Detail

toGenomeLength

public int toGenomeLength(int pixelLength,
                          int windowWidth)

pixelPositionOnWindow

public int pixelPositionOnWindow(long indexOnGenome,
                                 int windowWidth)

calcGenomePosition

public int calcGenomePosition(int xOnWindow,
                              int windowWidth)

width

public static long width(long x1,
                         long x2)

getXPosOnWindow

public int getXPosOnWindow(long indexOnGenome,
                           int canvasWidth)

getGenomeRange

public long getGenomeRange()

getReverse

public boolean getReverse()

hasOverlap

public boolean hasOverlap(long startOnGenome,
                          long endOnGenome)