org.utgenome.format.bed
Class BEDEntry

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Read
          org.utgenome.gwt.utgb.client.bio.Gene
              org.utgenome.gwt.utgb.client.bio.BEDGene
                  org.utgenome.format.bed.BEDEntry

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class BEDEntry
extends BEDGene

Representing each gene line of BED format

Author:

leo

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read

Read.ReadType

Field Summary

Fields inherited from class org.utgenome.gwt.utgb.client.bio.BEDGene

chr, score

Constructor Summary

BEDEntry()

Method Summary

static BEDEntry	createFromResultSet(String chr, ResultSet rs)
String	toString()

Methods inherited from class org.utgenome.gwt.utgb.client.bio.BEDGene

accept, cdsRange

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Gene

addCDS, addExon, adjustToOneOrigin, getCDS, getExon, getExon

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read

downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BEDEntry

public BEDEntry()

Method Detail

createFromResultSet

public static BEDEntry createFromResultSet(String chr,
                                           ResultSet rs)
                                    throws SQLException

Throws:

SQLException

toString

public String toString()

Overrides:

toString in class Interval