org.utgenome.shell
Class FastqToFasta

java.lang.Object
  org.utgenome.core.cui.UTGBCommandBase
      org.utgenome.shell.UTGBShellCommandBase
          org.utgenome.shell.UTGBShellCommand
              org.utgenome.shell.FastqToFasta

All Implemented Interfaces:

Comparable<org.xerial.util.opt.Command>, org.xerial.util.opt.Command

public class FastqToFasta
extends UTGBShellCommand

fastq2fasta command

Author:

leo

Field Summary

Fields inherited from class org.utgenome.shell.UTGBShellCommand

APP_FOLDER, EXPLODED_WEBAPP_DIR, SRC_FOLDER, WEBAPP_FOLDER

Fields inherited from class org.utgenome.shell.UTGBShellCommandBase

globalOption

Constructor Summary

FastqToFasta()

Method Summary

void	execute(String[] args)
String	getOneLinerDescription()
String	name()

Methods inherited from class org.utgenome.shell.UTGBShellCommand

compareTo, createContextXML, createFileFromTemplate, createFileFromTemplate, execute, getConfigFile, getHelpMessageResource, getObsolteConfigurationFile, getOneLineDescription, getOptionHolder, getPath, getProjectResourcePath, getProjectRoot, isInProjectRoot, loadUTGBConfig, maven, maven

Methods inherited from class org.utgenome.shell.UTGBShellCommandBase

execute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastqToFasta

public FastqToFasta()

Method Detail

execute

public void execute(String[] args)
             throws Exception

Specified by:

execute in interface org.xerial.util.opt.Command

Specified by:

execute in class UTGBShellCommand

Throws:

Exception

name

public String name()

Specified by:

name in interface org.xerial.util.opt.Command

Specified by:

name in class UTGBShellCommand

getOneLinerDescription

public String getOneLinerDescription()

Specified by:

getOneLinerDescription in class UTGBShellCommand