org.utgenome.format.silk.read
Class ReadDBBuilder.ReferenceReader

java.lang.Object
  org.utgenome.format.silk.read.Reference
      org.utgenome.format.silk.read.ReadDBBuilder.ReferenceReader

Enclosing class:

ReadDBBuilder

public static class ReadDBBuilder.ReferenceReader
extends Reference

Field Summary

Fields inherited from class org.utgenome.format.silk.read.Reference

name, s2ed, s2st, s2strand, score, start, strand, tag

Constructor Summary

ReadDBBuilder.ReferenceReader()

Method Summary

void	addRead(Read read)
void	appendSequence(String seq)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ReadDBBuilder.ReferenceReader

public ReadDBBuilder.ReferenceReader()

Method Detail

addRead

public void addRead(Read read)

Overrides:

addRead in class Reference

appendSequence

public void appendSequence(String seq)

Overrides:

appendSequence in class Reference

toString

public String toString()

Overrides:

toString in class Object