org.utgenome.format.fasta
Class FASTA

java.lang.Object
  org.utgenome.format.fasta.FASTA

public class FASTA
extends Object

Nested Class Summary

static class

FASTA.RawStringWrapper

Constructor Summary

FASTA(File fastaFile)

Method Summary

String	getRawSequence(String chr)
FASTA.RawStringWrapper	getSequence(String chr)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FASTA

public FASTA(File fastaFile)
      throws IOException,
             UTGBException

Throws:

IOException

UTGBException

Method Detail

getRawSequence

public String getRawSequence(String chr)

getSequence

public FASTA.RawStringWrapper getSequence(String chr)