org.utgenome.format.fastq
Class FastqToSilkReader

java.lang.Object
  java.io.Reader
      org.utgenome.format.FormatConversionReader
          org.utgenome.format.fastq.FastqToSilkReader

All Implemented Interfaces:

Closeable, Readable

public class FastqToSilkReader
extends FormatConversionReader

Read the FASTQ file input from the given reader as if it were a Silk

Author:

leo

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.format.FormatConversionReader

FormatConversionReader.PipeConsumer

Field Summary

Fields inherited from class java.io.Reader

lock

Constructor Summary

FastqToSilkReader(Reader fastqInput)

Method Summary

Methods inherited from class org.utgenome.format.FormatConversionReader

close, read

Methods inherited from class java.io.Reader

mark, markSupported, read, read, read, ready, reset, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastqToSilkReader

public FastqToSilkReader(Reader fastqInput)
                  throws IOException

Throws:

IOException