org.utgenome.format.silk.read
Class ReadDBBuilder

java.lang.Object
  org.utgenome.format.silk.read.ReadDBBuilder

public class ReadDBBuilder
extends Object

Reader

Author:

leo

Nested Class Summary

static class

ReadDBBuilder.ReferenceReader

Constructor Summary

ReadDBBuilder()

ReadDBBuilder(String dbFilePath)

Method Summary

void	addReference(ReadDBBuilder.ReferenceReader reference)
void	build(Reader input)
void	build(URL silkFile)
void	commit()
void	setCoordinate(Coordinate coordinate)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReadDBBuilder

public ReadDBBuilder()

ReadDBBuilder

public ReadDBBuilder(String dbFilePath)
              throws SQLException

Throws:

SQLException

Method Detail

build

public void build(Reader input)
           throws SQLException

Throws:

SQLException

build

public void build(URL silkFile)
           throws SQLException

Throws:

SQLException

setCoordinate

public void setCoordinate(Coordinate coordinate)
                   throws SQLException

Throws:

SQLException

addReference

public void addReference(ReadDBBuilder.ReferenceReader reference)
                  throws SQLException

Throws:

SQLException

commit

public void commit()
            throws SQLException

Throws:

SQLException