org.utgenome.gwt.utgb.client.canvas
Class GWTGenomeCanvas

java.lang.Object
  com.google.gwt.user.client.ui.UIObject
      com.google.gwt.user.client.ui.Widget
          com.google.gwt.user.client.ui.Composite
              org.utgenome.gwt.ipad.client.TouchableComposite
                  org.utgenome.gwt.utgb.client.canvas.GWTGenomeCanvas

All Implemented Interfaces:

com.google.gwt.event.logical.shared.HasAttachHandlers, com.google.gwt.event.shared.HasHandlers, com.google.gwt.user.client.EventListener, com.google.gwt.user.client.ui.HasVisibility, com.google.gwt.user.client.ui.IsRenderable, com.google.gwt.user.client.ui.IsWidget, HasTouchHandlers

public class GWTGenomeCanvas
extends TouchableComposite

Browser-side graphic canvas for drawing gene objects

Author:

leo

Nested Class Summary

static class	GWTGenomeCanvas.CoverageStyle
static class	GWTGenomeCanvas.DragPoint

Nested classes/interfaces inherited from class com.google.gwt.user.client.ui.UIObject

com.google.gwt.user.client.ui.UIObject.DebugIdImpl, com.google.gwt.user.client.ui.UIObject.DebugIdImplEnabled

Field Summary

char[]	chrSeq
int	intStartSeq
String	strSeq

Fields inherited from class com.google.gwt.user.client.ui.UIObject

DEBUG_ID_PREFIX

Constructor Summary

GWTGenomeCanvas()

Method Summary

void	clear()
void	clearWidgets()
void	displayInfo(int clientX, int clientY, GenomeRange g)
void	draw()
void	draw(Gene gene, int yPosition)
void	draw(Gene gene, List<Exon> exonList, CDS cds, int yPosition)
void	draw(Interval gene, int yPosition)
<T extends GenomeRange> void	drawBlock(ReadCoverage block)
void	drawExon(Gene gene, Exon exon, CDS cds, int yPosition)
void	drawGeneRect(int x1, int x2, int y, com.google.gwt.widgetideas.graphics.client.Color c, boolean drawShadow)
void	drawPadding(int x1, int x2, int y, com.google.gwt.widgetideas.graphics.client.Color c, boolean drawShadow)
com.google.gwt.widgetideas.graphics.client.Color	getCDSColor(Interval g)
com.google.gwt.widgetideas.graphics.client.Color	getCDSColor(Interval g, float alpha)
static com.google.gwt.widgetideas.graphics.client.Color	getColor(String hex, float alpha)
com.google.gwt.widgetideas.graphics.client.Color	getExonColor(Gene g)
com.google.gwt.widgetideas.graphics.client.Color	getGeneColor(Interval l)
com.google.gwt.widgetideas.graphics.client.Color	getGeneColor(Interval l, float alpha)
float	getPrefetchFactor()
TrackWindow	getPrefetchWindow()
int	getXOnCanvas(com.google.gwt.user.client.Event event)
int	getXOnCanvas(int clientX)
int	getYOnCanvas(com.google.gwt.user.client.Event event)
int	getYOnCanvas(int clientY)
boolean	hasCacheCovering(TrackWindow newWindow)
void	onBrowserEvent(com.google.gwt.user.client.Event event)
int	pixelPositionOnWindow(int indexOnGenome)
void	resetData(List<GenomeRange> readSet)
void	resetPrefetchFactor()
void	setAllowOverlapPairedReads(boolean allow)
void	setLocusClickHandler(LocusClickHandler handler)
void	setPixelSize(int width, int height)
void	setPrefetchFactor(float factor)
void	setReadStyle(ReadDisplayStyle style)
void	setSequencetxt(char[] chrSequence)
void	setSequencetxt(String strSequence)
void	setStartSeq(int startSeq)
void	setTrackGroup(TrackGroup trackGroup)
void	setTrackWindow(TrackWindow newWindow, boolean resetPrefetchWindow)
static int	width(int x1, int x2)

Methods inherited from class org.utgenome.gwt.ipad.client.TouchableComposite

addTouchCancelHandler, addTouchEndHandler, addTouchMoveHandler, addTouchStartHandler

Methods inherited from class com.google.gwt.user.client.ui.Composite

getWidget, initWidget, isAttached, onAttach, onDetach, performDetachedInitialization, render, render, resolvePotentialElement, setWidget, wrapElement

Methods inherited from class com.google.gwt.user.client.ui.Widget

addAttachHandler, addBitlessDomHandler, addDomHandler, addHandler, asWidget, asWidgetOrNull, createHandlerManager, delegateEvent, doAttachChildren, doDetachChildren, fireEvent, getHandlerCount, getLayoutData, getParent, isOrWasAttached, onLoad, onUnload, removeFromParent, setLayoutData, sinkEvents

Methods inherited from class com.google.gwt.user.client.ui.UIObject

addStyleDependentName, addStyleName, ensureDebugId, ensureDebugId, ensureDebugId, getAbsoluteLeft, getAbsoluteTop, getElement, getOffsetHeight, getOffsetWidth, getStyleElement, getStyleName, getStyleName, getStylePrimaryName, getStylePrimaryName, getTitle, isVisible, isVisible, onEnsureDebugId, removeStyleDependentName, removeStyleName, setElement, setElement, setHeight, setSize, setStyleDependentName, setStyleName, setStyleName, setStyleName, setStyleName, setStylePrimaryName, setStylePrimaryName, setTitle, setVisible, setVisible, setWidth, sinkBitlessEvent, toString, unsinkEvents

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

chrSeq

public char[] chrSeq

strSeq

public String strSeq

intStartSeq

public int intStartSeq

Constructor Detail

GWTGenomeCanvas

public GWTGenomeCanvas()

Method Detail

setLocusClickHandler

public void setLocusClickHandler(LocusClickHandler handler)

onBrowserEvent

public void onBrowserEvent(com.google.gwt.user.client.Event event)

Specified by:

onBrowserEvent in interface com.google.gwt.user.client.EventListener

Overrides:

onBrowserEvent in class com.google.gwt.user.client.ui.Composite

displayInfo

public void displayInfo(int clientX,
                        int clientY,
                        GenomeRange g)

setAllowOverlapPairedReads

public void setAllowOverlapPairedReads(boolean allow)

getXOnCanvas

public int getXOnCanvas(com.google.gwt.user.client.Event event)

getXOnCanvas

public int getXOnCanvas(int clientX)

getYOnCanvas

public int getYOnCanvas(int clientY)

getYOnCanvas

public int getYOnCanvas(com.google.gwt.user.client.Event event)

hasCacheCovering

public boolean hasCacheCovering(TrackWindow newWindow)

getPrefetchWindow

public TrackWindow getPrefetchWindow()

resetPrefetchFactor

public void resetPrefetchFactor()

getPrefetchFactor

public float getPrefetchFactor()

setPrefetchFactor

public void setPrefetchFactor(float factor)

setTrackWindow

public void setTrackWindow(TrackWindow newWindow,
                           boolean resetPrefetchWindow)

Parameters:

newWindow -

setTrackGroup

public void setTrackGroup(TrackGroup trackGroup)

pixelPositionOnWindow

public int pixelPositionOnWindow(int indexOnGenome)

clearWidgets

public void clearWidgets()

clear

public void clear()

width

public static int width(int x1,
                        int x2)

drawBlock

public <T extends GenomeRange> void drawBlock(ReadCoverage block)

resetData

public void resetData(List<GenomeRange> readSet)

setSequencetxt

public void setSequencetxt(char[] chrSequence)

setSequencetxt

public void setSequencetxt(String strSequence)

setStartSeq

public void setStartSeq(int startSeq)

draw

public void draw()

setPixelSize

public void setPixelSize(int width,
                         int height)

Overrides:

setPixelSize in class com.google.gwt.user.client.ui.UIObject

getColor

public static com.google.gwt.widgetideas.graphics.client.Color getColor(String hex,
                                                                        float alpha)

getGeneColor

public com.google.gwt.widgetideas.graphics.client.Color getGeneColor(Interval l)

getGeneColor

public com.google.gwt.widgetideas.graphics.client.Color getGeneColor(Interval l,
                                                                     float alpha)

getExonColor

public com.google.gwt.widgetideas.graphics.client.Color getExonColor(Gene g)

getCDSColor

public com.google.gwt.widgetideas.graphics.client.Color getCDSColor(Interval g,
                                                                    float alpha)

getCDSColor

public com.google.gwt.widgetideas.graphics.client.Color getCDSColor(Interval g)

draw

public void draw(Gene gene,
                 List<Exon> exonList,
                 CDS cds,
                 int yPosition)

drawPadding

public void drawPadding(int x1,
                        int x2,
                        int y,
                        com.google.gwt.widgetideas.graphics.client.Color c,
                        boolean drawShadow)

draw

public void draw(Interval gene,
                 int yPosition)

draw

public void draw(Gene gene,
                 int yPosition)

drawExon

public void drawExon(Gene gene,
                     Exon exon,
                     CDS cds,
                     int yPosition)

drawGeneRect

public void drawGeneRect(int x1,
                         int x2,
                         int y,
                         com.google.gwt.widgetideas.graphics.client.Color c,
                         boolean drawShadow)

setReadStyle

public void setReadStyle(ReadDisplayStyle style)