org.utgenome.gwt.utgb.server.app
Class ChromosomeMap

java.lang.Object
  javax.servlet.GenericServlet
      javax.servlet.http.HttpServlet
          org.utgenome.gwt.utgb.server.RequestHandlerBase
              org.utgenome.gwt.utgb.server.WebTrackBase
                  org.utgenome.gwt.utgb.server.app.ChromosomeMap

All Implemented Interfaces:

Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig, RequestHandler

public class ChromosomeMap
extends WebTrackBase

draw chromosome map

See Also:

Serialized Form

Nested Class Summary

static class	ChromosomeMap.Comparator4ChrName
static class	ChromosomeMap.CytoBandComprator
static class	ChromosomeMap.ReadLocus

Field Summary

String	bssQuery
String	dbGroup
String	dbName
String	displayType
long	end
String	name
String	revision
String	species
long	start
int	width

Constructor Summary

ChromosomeMap()

Method Summary

static ChrRange	getChrRegion(String species, String revision)
void	handle(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Handles the HTTP request

Methods inherited from class org.utgenome.gwt.utgb.server.WebTrackBase

createSQL, createSQLFromFile, createSQLStatement, getActionPrefix, getActionSuffix, getDatabaseAccess, getHTTPRequestQueryString, getProjectRootPath, getTrackConfigProperty, loadJSON, loadJSON, openAction, openAction, toJSON

Methods inherited from class org.utgenome.gwt.utgb.server.RequestHandlerBase

doGet, doPost, validate

Methods inherited from class javax.servlet.http.HttpServlet

doDelete, doHead, doOptions, doPut, doTrace, getLastModified, service, service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

species

public String species

revision

public String revision

displayType

public String displayType

width

public int width

start

public long start

end

public long end

dbGroup

public String dbGroup

dbName

public String dbName

bssQuery

public String bssQuery

name

public String name

Constructor Detail

ChromosomeMap

public ChromosomeMap()

Method Detail

handle

public void handle(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
            throws javax.servlet.ServletException,
                   IOException

Description copied from interface: RequestHandler

Handles the HTTP request

Specified by:

handle in interface RequestHandler

Specified by:

handle in class RequestHandlerBase

Parameters:

request - the http servlet request

response - the http servlet response

Throws:

javax.servlet.ServletException

IOException

getChrRegion

public static ChrRange getChrRegion(String species,
                                    String revision)