org.utgenome.format.psl
Class PSLLine

java.lang.Object
  org.utgenome.format.psl.PSLLine

public class PSLLine
extends Object

Constructor Summary

PSLLine()

Method Summary

int	getBlockCount()
int[]	getBlockSizes()
int	getMatches()
int	getMisMatches()
int	getNCount()
int	getQBaseInsert()
int	getQEnd()
String	getQName()
int	getQNumInsert()
int	getQSize()
int	getQStart()
int[]	getQStarts()
int	getRepMathces()
String	getStrand()
int	getTBaseInsert()
int	getTEnd()
String	getTName()
int	getTNumInsert()
int	getTSize()
int	getTStart()
int[]	getTStarts()
void	setBlockCount(int blockCount)
void	setBlockSizes(int[] blockSizes)
void	setMatches(int matches)
void	setMisMatches(int misMatches)
void	setNCount(int count)
void	setQBaseInsert(int baseInsert)
void	setQEnd(int end)
void	setQName(String name)
void	setQNumInsert(int numInsert)
void	setQSize(int size)
void	setQStart(int start)
void	setQStarts(int[] starts)
void	setRepMathces(int repMathces)
void	setStrand(String strand)
void	setTBaseInsert(int baseInsert)
void	setTEnd(int end)
void	setTName(String name)
void	setTNumInsert(int numInsert)
void	setTSize(int size)
void	setTStart(int start)
void	setTStarts(int[] starts)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PSLLine

public PSLLine()

Method Detail

getBlockCount

public int getBlockCount()

setBlockCount

public void setBlockCount(int blockCount)

getBlockSizes

public int[] getBlockSizes()

setBlockSizes

public void setBlockSizes(int[] blockSizes)

getMatches

public int getMatches()

setMatches

public void setMatches(int matches)

getMisMatches

public int getMisMatches()

setMisMatches

public void setMisMatches(int misMatches)

getNCount

public int getNCount()

setNCount

public void setNCount(int count)

getQBaseInsert

public int getQBaseInsert()

setQBaseInsert

public void setQBaseInsert(int baseInsert)

getQEnd

public int getQEnd()

setQEnd

public void setQEnd(int end)

getQName

public String getQName()

setQName

public void setQName(String name)

getQNumInsert

public int getQNumInsert()

setQNumInsert

public void setQNumInsert(int numInsert)

getQSize

public int getQSize()

setQSize

public void setQSize(int size)

getQStart

public int getQStart()

setQStart

public void setQStart(int start)

getQStarts

public int[] getQStarts()

setQStarts

public void setQStarts(int[] starts)

getRepMathces

public int getRepMathces()

setRepMathces

public void setRepMathces(int repMathces)

getStrand

public String getStrand()

setStrand

public void setStrand(String strand)

getTBaseInsert

public int getTBaseInsert()

setTBaseInsert

public void setTBaseInsert(int baseInsert)

getTEnd

public int getTEnd()

setTEnd

public void setTEnd(int end)

getTName

public String getTName()

setTName

public void setTName(String name)

getTNumInsert

public int getTNumInsert()

setTNumInsert

public void setTNumInsert(int numInsert)

getTSize

public int getTSize()

setTSize

public void setTSize(int size)

getTStart

public int getTStart()

setTStart

public void setTStart(int start)

getTStarts

public int[] getTStarts()

setTStarts

public void setTStarts(int[] starts)