org.utgenome.gwt.utgb.client.track.lib
Class SAMQueryTrack

java.lang.Object
  org.utgenome.gwt.utgb.client.track.TrackBase
      org.utgenome.gwt.utgb.client.track.lib.SAMQueryTrack

All Implemented Interfaces:

Track, TrackEntry, TrackGroupPropertyChangeListener

public class SAMQueryTrack
extends TrackBase

Track for displaying SAM/BAM query result

Author:

yoshimura

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.track.TrackBase

TrackBase.TrackFrameConfig

Nested classes/interfaces inherited from interface org.utgenome.gwt.utgb.client.track.Track

Track.TrackFactory

Field Summary

protected String	bamFileName
protected String	colorMode
protected int	end
protected String	indexFileName
protected String	refSeqFileName
protected int	start
protected String	target
protected String	trackBaseURL

Fields inherited from class org.utgenome.gwt.utgb.client.track.TrackBase

_frame, _trackGroup, _trackInfo, frameConfig

Constructor Summary

SAMQueryTrack()

Method Summary

static Track.TrackFactory	factory()
com.google.gwt.user.client.ui.Widget	getWidget()
void	onChangeTrackConfig(TrackConfigChange change) An event handler when some cofigurations of the track changes
void	onChangeTrackWindow(TrackWindow newWindow) An event handler when the track window location has changed
void	restoreProperties(CanonicalProperties properties) Override this method to restore internal state of the track
void	setUp(TrackFrame trackFrame, TrackGroup group) This method is invoked when TrackFrame and TrackGroup for this track become ready, that is, the track is drawable.
void	update(TrackWindow newWindow)

Methods inherited from class org.utgenome.gwt.utgb.client.track.TrackBase

beforeChangeTrackWindow, draw, error, getBrowserService, getClassName, getConfig, getCoordinate, getDefaultWindowHeight, getFrame, getMinimumWindowHeight, getName, getTrackGroup, getTrackGroupProperty, getTrackGroupProperty, getTrackInfo, getTrackWindow, isInitialized, isTrack, isTrackGroup, loadView, onChange, onChangeTrackGroupProperty, onChangeTrackHeight, refresh, resolvePropertyValues, saveProperties, setCenterOfTrackWindow, setConfig, setFrame, setTrackGroup, setTrackGroupProperty, toView, toXML, toXML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

trackBaseURL

protected String trackBaseURL

target

protected String target

start

protected int start

end

protected int end

bamFileName

protected String bamFileName

indexFileName

protected String indexFileName

refSeqFileName

protected String refSeqFileName

colorMode

protected String colorMode

Constructor Detail

SAMQueryTrack

public SAMQueryTrack()

Method Detail

factory

public static Track.TrackFactory factory()

getWidget

public com.google.gwt.user.client.ui.Widget getWidget()

Returns:

the track widget

setUp

public void setUp(TrackFrame trackFrame,
                  TrackGroup group)

Description copied from interface: Track

This method is invoked when TrackFrame and TrackGroup for this track become ready, that is, the track is drawable. Override this method to write initialization codes for your tracks.

Specified by:

setUp in interface Track

Overrides:

setUp in class TrackBase

group - the TrackGroup of this track

update

public void update(TrackWindow newWindow)

onChangeTrackWindow

public void onChangeTrackWindow(TrackWindow newWindow)

Description copied from interface: Track

An event handler when the track window location has changed

Specified by:

onChangeTrackWindow in interface Track

Overrides:

onChangeTrackWindow in class TrackBase

onChangeTrackConfig

public void onChangeTrackConfig(TrackConfigChange change)

Description copied from interface: Track

An event handler when some cofigurations of the track changes

Specified by:

onChangeTrackConfig in interface Track

Overrides:

onChangeTrackConfig in class TrackBase

restoreProperties

public void restoreProperties(CanonicalProperties properties)

Description copied from class: TrackBase

Override this method to restore internal state of the track

Specified by:

restoreProperties in interface Track

Overrides:

restoreProperties in class TrackBase