org.utgenome.format.blast
Class Blast2Silk

java.lang.Object
  extended by java.io.Reader
      extended by org.utgenome.format.FormatConversionReader
          extended by org.utgenome.format.blast.Blast2Silk
All Implemented Interfaces:
Closeable, Readable

public class Blast2Silk
extends FormatConversionReader

Converting blast (default) format into Silk

Author:
leo

Nested Class Summary
static class Blast2Silk.Blast2SilkConverter
           
static class Blast2Silk.BlastResult
           
static class Blast2Silk.PeekableReader
           
 
Nested classes/interfaces inherited from class org.utgenome.format.FormatConversionReader
FormatConversionReader.PipeConsumer
 
Field Summary
 
Fields inherited from class java.io.Reader
lock
 
Constructor Summary
Blast2Silk(Reader reader)
           
 
Method Summary
 
Methods inherited from class org.utgenome.format.FormatConversionReader
close, read
 
Methods inherited from class java.io.Reader
mark, markSupported, read, read, read, ready, reset, skip
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Blast2Silk

public Blast2Silk(Reader reader)
           throws IOException
Throws:
IOException


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