org.utgenome.format.blast
Class Blast2Silk

java.lang.Object
  java.io.Reader
      org.utgenome.format.FormatConversionReader
          org.utgenome.format.blast.Blast2Silk

All Implemented Interfaces:

Closeable, Readable

public class Blast2Silk
extends FormatConversionReader

Converting blast (default) format into Silk

Author:

leo

Nested Class Summary

static class	Blast2Silk.Blast2SilkConverter
static class	Blast2Silk.BlastResult
static class	Blast2Silk.PeekableReader

Nested classes/interfaces inherited from class org.utgenome.format.FormatConversionReader

FormatConversionReader.PipeConsumer

Field Summary

Fields inherited from class java.io.Reader

lock

Constructor Summary

Blast2Silk(Reader reader)

Method Summary

Methods inherited from class org.utgenome.format.FormatConversionReader

close, read

Methods inherited from class java.io.Reader

mark, markSupported, read, read, read, ready, reset, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Blast2Silk

public Blast2Silk(Reader reader)
           throws IOException

Throws:

IOException