org.utgenome.format.fasta
Class FASTADatabase.TextOutput

java.lang.Object
  org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase
      org.utgenome.format.fasta.FASTADatabase.TextOutput

All Implemented Interfaces:

org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Enclosing class:

FASTADatabase

public static class FASTADatabase.TextOutput
extends Sequence.SequenceRetrieverBase

Constructor Summary

FASTADatabase.TextOutput(PrintWriter writer, int start, int end, boolean isReverseStrand)

Method Summary

void	output(String subSequence)

Methods inherited from class org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase

finish, getComplement, getEnd, getStart, handle, handleException, init, isReverseStrand

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FASTADatabase.TextOutput

public FASTADatabase.TextOutput(PrintWriter writer,
                                int start,
                                int end,
                                boolean isReverseStrand)

Method Detail

output

public void output(String subSequence)

Specified by:

output in class Sequence.SequenceRetrieverBase