org.utgenome.gwt.utgb.server.app
Class Sequence.GraphicalOutput

java.lang.Object
  org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase
      org.utgenome.gwt.utgb.server.app.Sequence.GraphicalOutput

All Implemented Interfaces:

org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Enclosing class:

Sequence

public class Sequence.GraphicalOutput
extends Sequence.SequenceRetrieverBase

Field Summary

protected GenomeCanvas	canvas
static int	DEFAULT_HEIGHT
protected int	endOffset
static float	FONT_SIZE
protected int	startOffset

Constructor Summary

Sequence.GraphicalOutput(javax.servlet.http.HttpServletResponse response, int start, int end, int width, boolean isReverseStrand)

Method Summary

void	finish()
Color	getColor(char base)
void	output(String subSequence)

Methods inherited from class org.utgenome.gwt.utgb.server.app.Sequence.SequenceRetrieverBase

getComplement, getEnd, getStart, handle, handleException, init, isReverseStrand

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_HEIGHT

public static final int DEFAULT_HEIGHT

See Also:

Constant Field Values

FONT_SIZE

public static final float FONT_SIZE

See Also:

Constant Field Values

canvas

protected final GenomeCanvas canvas

startOffset

protected int startOffset

endOffset

protected int endOffset

Constructor Detail

Sequence.GraphicalOutput

public Sequence.GraphicalOutput(javax.servlet.http.HttpServletResponse response,
                                int start,
                                int end,
                                int width,
                                boolean isReverseStrand)

Method Detail

getColor

public Color getColor(char base)

output

public void output(String subSequence)

Specified by:

output in class Sequence.SequenceRetrieverBase

finish

public void finish()

Specified by:

finish in interface org.xerial.db.sql.BeanResultHandler<FASTADatabase.NSeq>

Overrides:

finish in class Sequence.SequenceRetrieverBase