Hierarchy For Package org.utgenome.format.sam

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • java.io.Reader (implements java.io.Closeable, java.lang.Readable)
    • org.utgenome.format.FormatConversionReader
      • org.utgenome.format.sam.SAM2SilkReader
  • org.utgenome.format.sam.ReadSweeper<T>
  • org.utgenome.format.sam.Sam2WigConverter
  • org.utgenome.format.sam.Sam2WigConverter.CoverageWriter (implements org.utgenome.util.ReadDepth.DepthOutput)
  • org.utgenome.format.sam.Sam2WigConverter.SAMRecordCursor (implements java.util.Iterator<E>)
  • org.utgenome.format.sam.SAMLens
  • org.utgenome.format.sam.SAMReader
  • org.utgenome.format.sam.SAMReader.CompleteSAMReadFactory (implements org.utgenome.format.sam.SAMReader.SAMReadFactory)
  • org.utgenome.format.sam.SAMReader.LightWeightSAMReadFactory (implements org.utgenome.format.sam.SAMReader.SAMReadFactory)
  • org.utgenome.format.sam.SAMReadIterator (implements java.util.Iterator<E>)
  • org.utgenome.format.sam.SAMToFastq

Interface Hierarchy

• org.utgenome.format.sam.ReadSweeper.ReadSetHandler<T>
• org.utgenome.format.sam.SAMReader.SAMReadFactory