org.utgenome.format.sam
Class ReadSweeper<T extends GenomeRange>

java.lang.Object
  org.utgenome.format.sam.ReadSweeper<T>

public class ReadSweeper<T extends GenomeRange>
extends Object

Sweeping SAM reads in their start order

Author:

leo

Nested Class Summary

static interface

ReadSweeper.ReadSetHandler<T extends GenomeRange>

Constructor Summary

ReadSweeper()

Method Summary

void	sweep(Iterator<T> cursor, ReadSweeper.ReadSetHandler<T> handler)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReadSweeper

public ReadSweeper()

Method Detail

sweep

public void sweep(Iterator<T> cursor,
                  ReadSweeper.ReadSetHandler<T> handler)