org.utgenome.shell
Class SAMToFastq

java.lang.Object
  org.utgenome.core.cui.UTGBCommandBase
      org.utgenome.shell.UTGBShellCommandBase
          org.utgenome.shell.UTGBShellCommand
              org.utgenome.shell.SAMToFastq

All Implemented Interfaces:

Comparable<org.xerial.util.opt.Command>, org.xerial.util.opt.Command

public class SAMToFastq
extends UTGBShellCommand

Field Summary

Fields inherited from class org.utgenome.shell.UTGBShellCommand

APP_FOLDER, EXPLODED_WEBAPP_DIR, SRC_FOLDER, WEBAPP_FOLDER

Fields inherited from class org.utgenome.shell.UTGBShellCommandBase

globalOption

Constructor Summary

SAMToFastq()

Method Summary

void	execute(String[] args)
String	getOneLinerDescription()
String	name()

Methods inherited from class org.utgenome.shell.UTGBShellCommand

compareTo, createContextXML, createFileFromTemplate, createFileFromTemplate, execute, getConfigFile, getHelpMessageResource, getObsolteConfigurationFile, getOneLineDescription, getOptionHolder, getPath, getProjectResourcePath, getProjectRoot, isInProjectRoot, loadUTGBConfig, maven, maven

Methods inherited from class org.utgenome.shell.UTGBShellCommandBase

execute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SAMToFastq

public SAMToFastq()

Method Detail

name

public String name()

Specified by:

name in interface org.xerial.util.opt.Command

Specified by:

name in class UTGBShellCommand

execute

public void execute(String[] args)
             throws Exception

Specified by:

execute in interface org.xerial.util.opt.Command

Specified by:

execute in class UTGBShellCommand

Throws:

Exception

getOneLinerDescription

public String getOneLinerDescription()

Specified by:

getOneLinerDescription in class UTGBShellCommand