org.utgenome.format.fasta
Class CompactFASTAGenerator

java.lang.Object
  org.utgenome.format.fasta.CompactFASTAGenerator

public class CompactFASTAGenerator
extends Object

Author:

leo

Field Summary

int	BUFFER_SIZE

Constructor Summary

CompactFASTAGenerator()

Method Summary

String	getWorkDir()
void	packFASTA(String fastaFilePath)
void	packFASTA(String fastaFilePrefix, InputStream in)
void	packFASTA(URL fastaFile)
void	setBuffferSize(int bufferSizeInMB)
void	setWorkDir(File workDir)
void	setWorkDir(String workDir)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BUFFER_SIZE

public int BUFFER_SIZE

Constructor Detail

CompactFASTAGenerator

public CompactFASTAGenerator()

Method Detail

setBuffferSize

public void setBuffferSize(int bufferSizeInMB)

setWorkDir

public void setWorkDir(String workDir)

setWorkDir

public void setWorkDir(File workDir)

getWorkDir

public String getWorkDir()

packFASTA

public void packFASTA(String fastaFilePath)
               throws IOException

Throws:

IOException

packFASTA

public void packFASTA(URL fastaFile)
               throws IOException

Throws:

IOException

packFASTA

public void packFASTA(String fastaFilePrefix,
                      InputStream in)
               throws IOException

Throws:

IOException