org.utgenome.gwt.utgb.client.bio
Class BEDGene

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.Read
          org.utgenome.gwt.utgb.client.bio.Gene
              org.utgenome.gwt.utgb.client.bio.BEDGene

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

Direct Known Subclasses:

BEDEntry

public class BEDGene
extends Gene
implements Serializable

Representing each gene line of BED format

Author:

yoshimura

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.utgenome.gwt.utgb.client.bio.Read

Read.ReadType

Field Summary

String	chr
int	score

Constructor Summary

BEDGene()

BEDGene(BEDGene other)

Method Summary

void	accept(GenomeRangeVisitor visitor)
CDS	cdsRange()

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Gene

addCDS, addExon, adjustToOneOrigin, getCDS, getExon, getExon

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Read

downstreamRegion, getColor, getName, getStrand, isAntiSense, isSense, setColor, setName, setStrand, upstreamRegion

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getEnd, getStart, hasOverlap, intersect, intersectsWith, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

chr

public String chr

score

public int score

Constructor Detail

BEDGene

public BEDGene()

BEDGene

public BEDGene(BEDGene other)

Method Detail

cdsRange

public CDS cdsRange()

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

Overrides:

accept in class Gene