org.utgenome.gwt.utgb.client.bio
Class GenomeDB

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.GenomeDB

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

DASLocation

public class GenomeDB
extends Object
implements Serializable

Database locator.

Author:

leo

See Also:

Serialized Form

Nested Class Summary

static class

GenomeDB.DBType

Field Summary

String	path database path.
String	ref reference sequence name to which this genome DB is associated
GenomeDB.DBType	type database type

Constructor Summary

	GenomeDB()
	GenomeDB(GenomeDB.DBType type, String path, String ref)
protected	GenomeDB(GenomeDB db)
	GenomeDB(String path, String refSeq)

Method Summary

GenomeDB.DBType	resolveDBType()
static GenomeDB.DBType	resolveDBType(GenomeDB db) Resolve the db type when the db type is AUTO.
static GenomeDB.DBType	resolveDBType(String path)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

path

public String path

database path. When the path starts with "local:", it searches for locally stored database files.

ref

public String ref

reference sequence name to which this genome DB is associated

type

public GenomeDB.DBType type

database type

Constructor Detail

GenomeDB

public GenomeDB()

GenomeDB

protected GenomeDB(GenomeDB db)

GenomeDB

public GenomeDB(String path,
                String refSeq)

GenomeDB

public GenomeDB(GenomeDB.DBType type,
                String path,
                String ref)

Method Detail

toString

public String toString()

Overrides:

toString in class Object

resolveDBType

public GenomeDB.DBType resolveDBType()

resolveDBType

public static GenomeDB.DBType resolveDBType(GenomeDB db)

Resolve the db type when the db type is AUTO.

Parameters:

db -

Returns:

the resolved data type, or null if no appropriate db type is found

resolveDBType

public static GenomeDB.DBType resolveDBType(String path)