org.utgenome.util.repeat
Class RepeatChainFinder

java.lang.Object
  org.utgenome.util.repeat.RepeatChainFinder

public class RepeatChainFinder
extends Object

Perform chaining of interval fragments

Author:

leo

Nested Class Summary

static class	RepeatChainFinder.FlippedInterval2D
static class	RepeatChainFinder.Interval2D 2D interval
static class	RepeatChainFinder.IntervalCluster

Constructor Summary

RepeatChainFinder()

Method Summary

List<RepeatChainFinder.IntervalCluster>	createClusters(DisjointSet<RepeatChainFinder.Interval2D> clusterSet)
void	execute(String[] args)
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RepeatChainFinder

public RepeatChainFinder()

Method Detail

main

public static void main(String[] args)

execute

public void execute(String[] args)
             throws Exception

Throws:

Exception

createClusters

public List<RepeatChainFinder.IntervalCluster> createClusters(DisjointSet<RepeatChainFinder.Interval2D> clusterSet)