org.utgenome.gwt.utgb.client.bio
Class ReadCoverage

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.ReadCoverage

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class ReadCoverage
extends Interval

Read coverage histogram

Author:

leo

See Also:

Serialized Form

Field Summary

int[]	coverage Coverage of each pixel position
int	maxHeight
int	minHeight
int	pixelWidth

Constructor Summary

ReadCoverage()

ReadCoverage(int start, int end, int pixelWidth, int[] coverage)

Method Summary

void	accept(GenomeRangeVisitor visitor)
String	getName()
void	setName(String name)

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

coverage

public int[] coverage

Coverage of each pixel position

pixelWidth

public int pixelWidth

maxHeight

public int maxHeight

minHeight

public int minHeight

Constructor Detail

ReadCoverage

public ReadCoverage()

ReadCoverage

public ReadCoverage(int start,
                    int end,
                    int pixelWidth,
                    int[] coverage)

Method Detail

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

Overrides:

accept in class Interval

setName

public void setName(String name)

getName

public String getName()

Specified by:

getName in interface GenomeRange

Overrides:

getName in class Interval