org.utgenome.gwt.utgb.client.bio
Class ReadList

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.ReadList

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class ReadList
extends Interval

ReadList is a list of read objects, and used to draw a sequence of blocks on genome.

Author:

leo

See Also:

Serialized Form

Constructor Summary

ReadList()

Method Summary

void	accept(GenomeRangeVisitor visitor)
void	addRead(GenomeRange read)
String	getName()
List<GenomeRange>	getRead()
void	setName(String name)

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ReadList

public ReadList()

Method Detail

getName

public String getName()

Specified by:

getName in interface GenomeRange

Overrides:

getName in class Interval

setName

public void setName(String name)

addRead

public void addRead(GenomeRange read)

getRead

public List<GenomeRange> getRead()

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

Overrides:

accept in class Interval