org.utgenome.gwt.utgb.server.app
Class CSEGViewer

java.lang.Object
  javax.servlet.GenericServlet
      javax.servlet.http.HttpServlet
          org.utgenome.gwt.utgb.server.RequestHandlerBase
              org.utgenome.gwt.utgb.server.WebTrackBase
                  org.utgenome.gwt.utgb.server.app.CSEGViewer

All Implemented Interfaces:

Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig, RequestHandler

public class CSEGViewer
extends WebTrackBase

See Also:

Serialized Form

Nested Class Summary

class	CSEGViewer.GraphicalOutput
static class	CSEGViewer.SEGData A holder for retrieving compressed genome sequence

Field Summary

static int	DEFAULT_HEIGHT
static int	DEFAULT_HEIGHT_PER_SAMPLE
long	end
String	fileName
String	name
String	revision
String	species
long	start
int	width

Constructor Summary

CSEGViewer()

Method Summary

void	handle(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Handles the HTTP request

Methods inherited from class org.utgenome.gwt.utgb.server.WebTrackBase

createSQL, createSQLFromFile, createSQLStatement, getActionPrefix, getActionSuffix, getDatabaseAccess, getHTTPRequestQueryString, getProjectRootPath, getTrackConfigProperty, loadJSON, loadJSON, openAction, openAction, toJSON

Methods inherited from class org.utgenome.gwt.utgb.server.RequestHandlerBase

doGet, doPost, validate

Methods inherited from class javax.servlet.http.HttpServlet

doDelete, doHead, doOptions, doPut, doTrace, getLastModified, service, service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

species

public String species

revision

public String revision

name

public String name

start

public long start

end

public long end

fileName

public String fileName

width

public int width

DEFAULT_HEIGHT_PER_SAMPLE

public static final int DEFAULT_HEIGHT_PER_SAMPLE

See Also:

Constant Field Values

DEFAULT_HEIGHT

public static final int DEFAULT_HEIGHT

See Also:

Constant Field Values

Constructor Detail

CSEGViewer

public CSEGViewer()

Method Detail

handle

public void handle(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
            throws javax.servlet.ServletException,
                   IOException

Description copied from interface: RequestHandler

Handles the HTTP request

Specified by:

handle in interface RequestHandler

Specified by:

handle in class RequestHandlerBase

Parameters:

request - the http servlet request

response - the http servlet response

Throws:

javax.servlet.ServletException

IOException