org.utgenome.gwt.utgb.client.bio
Class OnGenomeDataVisitorBase

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.OnGenomeDataVisitorBase

All Implemented Interfaces:

OnGenomeDataVisitor

Direct Known Subclasses:

InfoSilkGenerator, IntervalLayout.IntervalRetriever

public class OnGenomeDataVisitorBase
extends Object
implements OnGenomeDataVisitor

Refereece implementation of the OnGenomeDataVisitor. This visitor redirects the visiting event to the parent class of each data type.

Author:

leo

Constructor Summary

OnGenomeDataVisitorBase()

Method Summary

void	visitBEDGene(BEDGene g)
void	visitDefault(OnGenome g)
void	visitGap(Gap p)
void	visitGene(Gene g)
void	visitGraph(GraphData graph)
void	visitInterval(Interval interval)
void	visitRead(Read r)
void	visitReadCoverage(ReadCoverage readCoverage)
void	visitReadList(ReadList readList)
void	visitSAMRead(SAMRead r)
void	visitSAMReadLight(SAMReadLight r)
void	visitSAMReadPair(SAMReadPair pair)
void	visitSAMReadPairFragment(SAMReadPairFragment fragment)
void	visitSequence(ReferenceSequence referenceSequence)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OnGenomeDataVisitorBase

public OnGenomeDataVisitorBase()

Method Detail

visitDefault

public void visitDefault(OnGenome g)

Specified by:

visitDefault in interface OnGenomeDataVisitor

visitGap

public void visitGap(Gap p)

Specified by:

visitGap in interface OnGenomeDataVisitor

visitGene

public void visitGene(Gene g)

Specified by:

visitGene in interface OnGenomeDataVisitor

visitBEDGene

public void visitBEDGene(BEDGene g)

Specified by:

visitBEDGene in interface OnGenomeDataVisitor

visitInterval

public void visitInterval(Interval interval)

Specified by:

visitInterval in interface OnGenomeDataVisitor

visitRead

public void visitRead(Read r)

Specified by:

visitRead in interface OnGenomeDataVisitor

visitReadCoverage

public void visitReadCoverage(ReadCoverage readCoverage)

Specified by:

visitReadCoverage in interface OnGenomeDataVisitor

visitSAMRead

public void visitSAMRead(SAMRead r)

Specified by:

visitSAMRead in interface OnGenomeDataVisitor

visitSequence

public void visitSequence(ReferenceSequence referenceSequence)

Specified by:

visitSequence in interface OnGenomeDataVisitor

visitGraph

public void visitGraph(GraphData graph)

Specified by:

visitGraph in interface OnGenomeDataVisitor

visitSAMReadPair

public void visitSAMReadPair(SAMReadPair pair)

Specified by:

visitSAMReadPair in interface OnGenomeDataVisitor

visitSAMReadPairFragment

public void visitSAMReadPairFragment(SAMReadPairFragment fragment)

Specified by:

visitSAMReadPairFragment in interface OnGenomeDataVisitor

visitReadList

public void visitReadList(ReadList readList)

Specified by:

visitReadList in interface OnGenomeDataVisitor

visitSAMReadLight

public void visitSAMReadLight(SAMReadLight r)

Specified by:

visitSAMReadLight in interface OnGenomeDataVisitor